K15304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15304

Determination of introduced cDNA(s)

  • J033135E06 - Rice Full-length cDNAs - Original: J033135E06

    full reading [+] show sequence

    Nucleotide sequence: J033135E06 - full reading
    GGGTGGTGGT GGTCGTCGTC GACTCGCCCG CACGCACACG CCCGCGGCCG 
    AGCCACTCTT CTCCGCACGC GGTGCCCGTC TGCTACTCTG CCGTGTTGGC
    CGCCGCGCCC ACCTTTCCTC CCCCGCCCCT TTCCGCTAAA GCCGCCGTGT
    TCATCGCGTC GGCGACCTAC CTACCTACCC TCCTTACTCC GAACTCAGGC
    AGGCTCTCGT CTCTTCTTCC TCCCTCCTCC CTCTCTCGCC CCAAGCCCTA
    AATGGCGGCG CAGGGGATCG CGGAGGCGGT GCAGGCCTAC ACGGGCCTCT
    CCCCGGCGGC GGCCGTCACC ATCCTGGCCC TCATGCTCGC CACCTACCTC
    CTCGTGTCCT CCCTGTTCGT CGCCCCGGAC GCCGCGCCCC CCAAGCCGCC
    TCCGCAGCGG AAGGAGGAAG AGCAGCAGCA GCAGCAGGAG GAGGAGGAGG
    CGGGGGCGTT TGTGCCTTAT CCGGACCCTG TACAGGTGGG CGAGATCACG
    CTCGAGCAGC TCGCGGCCTA CGACGGCAAG GACCCCGCGA AGCCGATCCT
    CATCGCCATC CGCGGCCAGG TCTACGACGT CACGCGCGGG AGGCTCTTTT
    ATGGTCCTCA AGGACCATAT TCCTTGTTTG CTGGGAGGGA TGCAACTCGG
    GCCCTTGCAT TGATGTCGTT TGACCCTATT GACCTCACTG GAGATTTGGA
    TGGCCTTGGT CCAGACGAGC TAGAGGTCTT GCAAGATTGG GAAGATAAGT
    TTAAAGAGCG GTATCCTACG GTGGGCCACC TTGCTTCAGA AAATGCAGCG
    GATGGTAACC ACGGTGGCGC AGCTTGATCA CGAGGAAGGA ATGCTTTACT
    CCATCGGTTT GTCAGTTTCT CTGTTCTTTT TTACTGGATT GCAAGTGGGT
    AGATCTGATC ATATGATGCT CTGGTAGGCT CTGTTGCTTG TGTGCTGTTG
    TCGTGCGTGA CTAATGTACC AGCTTTCCCC ATCTGCTTTT ATTTTGGTTT
    GCAGTGGATG AGGAGGAAAT TTTGAGCGAC TTGACT

    Gene models with high sequence identity

    1. AT3G48890.1 [+] show detail - membrane-associated progesterone binding protein 3
      E-value: 1e-33; Score: 140.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR10281 2.39999798157241e-58
    superfamily Cytochrome b5 1.1e-32
    HMMPfam Cytochrome b5 9.40000000000003e-14
    HMMPanther PTHR10281:SF8 2.39999798157241e-58
    Gene3D Cytochrome b5 5.20000089003276e-33

    See the detailed result >

    AT3G48890.1

    Model type
    Protein coding
    Short Description
    membrane-associated progesterone binding protein 3
    Curator Summary
    putative progesterone-binding protein homolog (Atmp2) mRNA,
    Computational Description
    membrane-associated progesterone binding protein 3 (MAPR3); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.1); Has 1079 Blast hits to 1069 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 428; Fungi - 337; Plants - 203; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR