K15304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15304

Determination of introduced cDNA(s)

J033135E06 - Rice Full-length cDNAs - Original: J033135E06

full reading [+] show sequence

GGGTGGTGGT GGTCGTCGTC GACTCGCCCG CACGCACACG CCCGCGGCCG 
AGCCACTCTT CTCCGCACGC GGTGCCCGTC TGCTACTCTG CCGTGTTGGC 
CGCCGCGCCC ACCTTTCCTC CCCCGCCCCT TTCCGCTAAA GCCGCCGTGT 
TCATCGCGTC GGCGACCTAC CTACCTACCC TCCTTACTCC GAACTCAGGC 
AGGCTCTCGT CTCTTCTTCC TCCCTCCTCC CTCTCTCGCC CCAAGCCCTA 
AATGGCGGCG CAGGGGATCG CGGAGGCGGT GCAGGCCTAC ACGGGCCTCT 
CCCCGGCGGC GGCCGTCACC ATCCTGGCCC TCATGCTCGC CACCTACCTC 
CTCGTGTCCT CCCTGTTCGT CGCCCCGGAC GCCGCGCCCC CCAAGCCGCC 
TCCGCAGCGG AAGGAGGAAG AGCAGCAGCA GCAGCAGGAG GAGGAGGAGG 
CGGGGGCGTT TGTGCCTTAT CCGGACCCTG TACAGGTGGG CGAGATCACG 
CTCGAGCAGC TCGCGGCCTA CGACGGCAAG GACCCCGCGA AGCCGATCCT 
CATCGCCATC CGCGGCCAGG TCTACGACGT CACGCGCGGG AGGCTCTTTT 
ATGGTCCTCA AGGACCATAT TCCTTGTTTG CTGGGAGGGA TGCAACTCGG 
GCCCTTGCAT TGATGTCGTT TGACCCTATT GACCTCACTG GAGATTTGGA 
TGGCCTTGGT CCAGACGAGC TAGAGGTCTT GCAAGATTGG GAAGATAAGT 
TTAAAGAGCG GTATCCTACG GTGGGCCACC TTGCTTCAGA AAATGCAGCG 
GATGGTAACC ACGGTGGCGC AGCTTGATCA CGAGGAAGGA ATGCTTTACT 
CCATCGGTTT GTCAGTTTCT CTGTTCTTTT TTACTGGATT GCAAGTGGGT 
AGATCTGATC ATATGATGCT CTGGTAGGCT CTGTTGCTTG TGTGCTGTTG 
TCGTGCGTGA CTAATGTACC AGCTTTCCCC ATCTGCTTTT ATTTTGGTTT 
GCAGTGGATG AGGAGGAAAT TTTGAGCGAC TTGACT

Gene models with high sequence identity

AT3G48890.1 [+] show detail - membrane-associated progesterone binding protein 3
E-value: 1e-33; Score: 140.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PTHR10281	2.39999798157241e-58
superfamily	Cytochrome b5	1.1e-32
HMMPfam	Cytochrome b5	9.40000000000003e-14
HMMPanther	PTHR10281:SF8	2.39999798157241e-58
Gene3D	Cytochrome b5	5.20000089003276e-33

See the detailed result >

AT3G48890.1

Model type: Protein coding
Short Description: membrane-associated progesterone binding protein 3
Curator Summary: putative progesterone-binding protein homolog (Atmp2) mRNA,
Computational Description: membrane-associated progesterone binding protein 3 (MAPR3); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.1); Has 1079 Blast hits to 1069 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 428; Fungi - 337; Plants - 203; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Link: InterPro Scan - TAIR