K15318

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15318

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K15318

Determination of introduced cDNA(s)

  • J023050B20 - Rice Full-length cDNAs - Original: J023050B20

    full reading [+] show sequence

    Nucleotide sequence: J023050B20 - full reading 
    GGTGGAGGGG AGCAATATAA TAGCCGCGCT TAGCGTAACT AGACGAACGT 
    ACTAGCAGAA GAAGAAGAAG AAAATGCCGG TGAGCCGGAT CGCGGTGGGC 
    GCCCCCGGCG AGCTGTCCCA CCCGGACACG GCCAAGGCCG CCGTCGCCGA 
    GTTCATCTCT ATGCTCATCT TCGTCTTCGC CGGATCGGGA TCCGGCATGG 
    CCTTCAGCAA GCTGACGGAC GGCGGCGGCA CGACGCCGTC GGGGCTGATC 
    GCCGCCTCCC TGGCGCACGC GCTGGCCCTG TTCGTGGCGG TGGCGGTGGG 
    AGCCAACATC TCCGGCGGGC ACGTGAACCC GGCGGTGACA TTCGGCGCGT 
    TCGTGGGGGG GAACATCAGC CTGGTGAAGA CGGTGGTGTA CTGGGTGGCG 
    CAGCTGCTGG GGTCGGTGGT GGCGTGCCTG CTGCTCAAGA TCGCGACGGG 
    CGGCGCCGCC GTGGGTGCCT TCTCGCTGTC GGCGGGCGTG GGCGCCTGGA 
    ACGCGGTGGT GTTCGAGATC GTCATGACCT TCGGCCTCGT CTACACCGTG 
    TACGCCACCG CGGTGGATCC CAAGAAGGGC GACCTCGGTG TCATCGCCCC 
    CATCGCCATC GGCTTCATCG TCGGCGCCAA CATCCTCGCC GGCGGCGCCT 
    TCGACGGCGC CTCCATGAAC CCCGCCGTCT CCTTCGGCCC CGCCGTCGTC 
    ACCGGAGTCT GGGACAACCA CTGGGTCTAC TGGCTCGGCC CCTTCGTCGG 
    CGCCGCCATC GCCGCGCTCA TCTACGACAT CATCTTCATC GGCCAGCGCC 
    CGCACGACCA GCTGCCCACC GCCGACTACT GATCATATCA TATCATATCG 
    TCTGCTCCCA GTCTCAATAA TCGAATTCGT CCCCCGTCTC GATCCATATA 
    TAGCTAGAAT ATTAATTACT CCATGCAGCT GCTACCTGTG TCGTCTTCCA 
    CCCCCAATCA ATTACTACTC TCTTCTTCTG TACAAACAAA TTACGTAAAT 
    CTCCTTTAAT TCCAAAATCT GTGCTGTGCT GTCAACCAAG CCAACCATGC 
    ATTGCAGCTG TAACGTCGTC CATCCATCGG TTGTCTCATC TGCAATATAA 
    TGTCAACACA TCCCATGCAT CCTAATCCAA AGCTCTCTTC ACTGTCGTT

    Gene models with high sequence identity

    1. AT4G01470.1 [+] show detail - tonoplast intrinsic protein 1;3
      E-value: 2e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major intrinsic protein 3.4e-63
    PatternScan Major intrinsic protein, conserved site 0
    FPrintScan Major intrinsic protein 2.5e-51
    FPrintScan Major intrinsic protein 2.5e-51
    FPrintScan Major intrinsic protein 2.5e-51
    FPrintScan Major intrinsic protein 2.5e-51
    FPrintScan Major intrinsic protein 2.5e-51
    FPrintScan Major intrinsic protein 2.5e-51
    HMMTigr Aquaporin 1.1e-70
    HMMPfam Major intrinsic protein 5.7e-75
    Gene3D Major intrinsic protein 4.9e-62
    HMMPanther TONOPLAST INTRINSIC PROTEIN 6.8e-124
    HMMPanther Major intrinsic protein 6.8e-124

    See the detailed result >

    AT4G01470.1

    Model type
    Protein coding
    Short Description
    tonoplast intrinsic protein 1;3
    Curator Summary
    Encodes AtTIP1;3, functions as water and urea channels in pollen.
    Computational Description
    tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR