K15329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15329

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15329

Determination of introduced cDNA(s)

  • J033048M19 - Rice Full-length cDNAs - Original: J033048M19

    full reading [+] show sequence

    Nucleotide sequence: J033048M19 - full reading 
    GAGCACTGCC AACTCCCATT TTTTAAAGCT CAAAAAATCC ATTCTTTTTT 
    CTGAAATAAG ATTTTCTTTT TTTTCTTGGT TTGCATTAGC AGTATATATG 
    CACACACACT CATTCCTACA CTAACAATCT TACTACATCA TATCATTAAC 
    ACTTGCAGGC CTGTCTAGAG GGCAGCCATG GCCACTGTTT CTGACATCGG 
    CCTCTCCGCG GCTATCAACG TCTCGATGGC CGTTGCATTC TTGCTGGTCT 
    TTGCTTTTCT ACGATTACAG CCCATCAACG ATAGGGTTTA CTTTCCAAAA 
    TGGTACCTCA GAGGAATGAG AGACAGCCCT GTTTCCTCTG GTGCTGCAGT 
    GCAAAAGGTT GTCAATTTAA ACATGAGATC ATACTTGAAA TTTTTAAGTT 
    GGATGCCGGC TGCTCTCAAG ATGCCAGAGG ATGAGTTGAT CAATCATGCA 
    GGCCTTGATT CCGCTGTCTA TCTACGGATA TACCTAACAG GGATCAAGAT 
    ATTCGTTCCA ATATCAATTT TAGCTTCGCT TGTTCTGTTC CCTGTGAACT 
    GGACAAATGA CACCCTAGAC AGCATGAAGG TAGTCCACAG TAAAATTGAC 
    AAACTTTCAA TATCAAACAT ACCTTATGGG TCAAACAGGT TTGTTACTCA 
    CTTGGTTATG GCTTATGCTG TCACGTTTTG GACCTGCTAT GTACTGTTCC 
    GAGAGTATGA GATAATTACA ACGATGAGAT TGCGGTTTCT TGCTTCAGAG 
    AAACGGCGAC CAGACCAGTT TACAGTTCTT GTGCGGAATA TACCTCCAGA 
    TCCTGATGAA TCAATTAGTG AGCTCGTGGA GCATTTCTTC CTTGTTAATC 
    ATCCTGATCA TTATCTAAGA CACCAGGTGG TTTACAATGC AAATAAACTT 
    GCTGATCTGG TTGAGAAGAA GAAGAAACTG CAAAATTGGC TTGATTACTA 
    CCAGCTCAAG TATGAAAGAA ATCCATCAAA AAGGCCCACC ACTAAGACTG 
    GCTTTCTTGG CTGTTTTGGT TCCGAGGTGG ATGCCATTGA ATACTACAAA 
    GCAGAGATTG AGAAGATTGG GAAAGAAGAA GCTGATGAGC GTCAAAAGAT 
    CATGAAGGAT CCCCAGTCAG CTGTTCCAGC AGCCTTTGTT TCATTTCGTT 
    CACGGTGGGG GGCTGCTGTT TGTGCTCAGA CACAGCAAAC CAGTAATCCA 
    ACAGTCTGGA TAACTGAATG GGCTCCAGAA CCTCGTGATG TCTACTGGAA 
    TAATCTATCC ATTCCATTTG TGTCCCTCAC AGTTAGGAGG CTGATAGTTG 
    CTGTGGCATT CTTCTTCCTC AACTTTTTTT ATGTCATTCC AATAGCATTC 
    GTGCAATCTC TTGCAAGCCT TGAAGGAATA GAAAAGGCGC TTCCATTTCT 
    GAAACCCTTA ATCAAAATTG ATGTCATCAA ATCATTCATC CAAGGTTTTC 
    TTCCAGGAAT TGCTTTGAAG GTCTTCCTTA TATTGCTTCC AACTATACTG 
    ATGTTTATGT CTAAGTTTGA AGGATTAATA TCACAGTCAT CACTGGAGCG 
    AAGATCTGCA TCTAAATATT ATATCTTCTT GTTCTTCAAT GTATTTTTGG 
    GAAGCATCGT TACAGGATCT GCTTTAGATC AGCTTAAGGC ATACATTCAT 
    CAGTCGGCAA ATGAAATACC GAGAACCATC GGTGTAGCCA TTCCAATGAG 
    GGCGACTTTT TTCATAACAT ATGTAATGGT TGACGGTTGG ACTGGTGTAG 
    CTGGTGAAAT ATTGAGATTG AGGGCACTTA TAATCTTCCA TTTGAAAAAC 
    TTTTTCTTGG TGAAGACTGA AAAGGACAGA GAAGAGGCAA TGGATCCTGG 
    TAGTATCTGT TTTGATTGGT GTGAACCACG TATACAGCTA TATTTCTTAC 
    TTGGCCTTGT CTATGCTGTG GTGACACCGT TATTGCTTCC TTTCATATTG 
    GTATTCTTCG GGCTGGCATA TGTTGTCTAC CGCCACCAGA TAATAAATGT 
    CTACAATCAA CAATACGAGA GTGGTGCACA GTTTTGGCCG AGTGTGCACG 
    GGCGCATAAT CATTGCATTG ATCGTATCAC AGCTACTTCT TATTGGACTG 
    TTGAGTACAA AAGGTTTCGA GGAGACGACA CCAGTTCTTG TTGTTCTTCC 
    TGTGTTGACG TTTTGGTTTT ACAAGTACTG CAAGAACCGG TTTGAGCCTG 
    CATTTGTGAG GAACCCACTA CAGGAAGCGA TGAGGAAAGA CACCCTGGAA 
    CGGGCAAGGG AGCCAACCTT CGATCTGAAA GCGTACCTGG CCAATGCGTA 
    CCTGCACCCG GTGTTCAAAG GCAGGGAGGA GGAGGACAAT ATGTCAATAT 
    CCGAGGATGT CGGGATGGAG GAGGTGATCG TGCCGACCAA GCGTCAATCT 
    CGCCGGAACA CTCCCGCCCA GAGCAAGTAC GAAGGCTCCG ACACGCTCTC 
    TCTTCCTGAA ACTGTACACG AACGATAGAG CTACGGGAAT ATCAGGGTGA 
    CTACTAGCTT GTTGAATTCT TTATAGTCTG TACAGATAGA TTGATACATA 
    CCTACTCCTA CGGGGATGTT GGCAGATAGC TTTGCTGTAC ACTTTACAGC 
    ACGAGAGGTA TATGGAGGGA TTGTTCAACA CCCACAGACT GATGATTGGA 
    TTGCCAATAT TATGATTTCT TTGTTGGTTC C

    Gene models with high sequence identity

    1. AT4G22120.6 [+] show detail - ERD (early-responsive to dehydration stress) family protein
      E-value: 0; Score: 992.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF221 6.8e-102
    HMMPanther RSN1(YEAST)-RELATED PROBABLE MEMBRANE PROTEIN 1.3e-284
    HMMPanther PROBABLE MEMBRANE PROTEIN DUF221-RELATED 1.3e-284

    See the detailed result >

    AT4G22120.6

    Model type
    Protein coding
    Short Description
    ERD (early-responsive to dehydration stress) family protein
    Computational Description
    ERD (early-responsive to dehydration stress) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G04340.1).
    Link
    InterPro Scan - TAIR