K15332

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15332

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15332

Determination of introduced cDNA(s)

  • J033123M10 - Rice Full-length cDNAs - Original: J033123M10

    full reading [+] show sequence

    Nucleotide sequence: J033123M10 - full reading 
    GGAGGACTAC ACGACCCAGG CGTTCATGGT GTCGGACAAG GCGGAGGACG 
    CGAGCCTCGC CGTGGTGGCG TTCTGCGGCA CGAAGCCGTT CGACACGGAG 
    CAGTGGTGCG CCGACGTGGA CTTCTCGTGG TACGAGATCC CCGGCGTCGG 
    CAAGGTCCAC GGCGGCTTCA TGAAGGCGCT GGGCCTGCAG AGGAACGGCG 
    GCTGGCCGGA GCAACCCACC GGCGCCGGAG ACGACGGCGG CAGCGACAAG 
    AAGCCGTTCG CCTACTACGT CATCCGCGAG CGGCTCAGGG CGTTCCTGGC 
    GGAGAACCCG CGCGCCCGGT TCGTGGTCGC CGGGCACAGC CTCGGCGGCG 
    CGCTCGCCAT CCTCTTCCCG ACCGTGCTGG CGCTGCACGG CGAGGAGGAC 
    ATGCTGGCGA GGCTCCACGG CGTGTACACG TTCGGGCAGC CGCGCGTCGG 
    CGACGAGGGG CTCTGCCGGT TCATGGACGG GCACCTGGCG ACGCCGGTGA 
    GCCGGTACTT CAGGTTCGTG TACTGCAACG ACATCGTGCC CAGGGTGCCC 
    TACGACGACA CGGCCCTTCT GTTCAAGCAC TTTGGGACGT GCCTCTACTT 
    CGACAGCTTC TACAAAGGCC ATGTGACGGA GGAGGAGCCG AACAAGAACT 
    ACTTCTCGCT GCTGACGGTG GTGCCCAAGT ACGCGAACGC GGCGTGGGAG 
    CTCGCCCGGA GCTTCGTCAT CGGCTATGTC GACGGGCCGG AGTACGGTGA 
    GGGTTGGCTG ATGAGGATCG CCAGGGCCGC CGGGCTGCTG CTGCCGGGCC 
    TGCCGCCGCA CGCGCCGCAG GACTACGTGA ACGCCACCAG GCTCGGCGCC 
    GCCTCGCTCG AGCCGCTCCG ATAGGTAGCT CGTCGGCGTC GGCGCCAACA 
    CATTTAGTAG TAAACTAGTA ACAGGCTTGT GATTCATGAT TCATGAAGTG 
    GAATGCAACA TACACAGTGT AAATTCATGC CTTAAACACA ATAATATGAT 
    TCATAAAGTG GAATGCAGCA TTCATTTTCA GAATTCTTGA ACAAGACAGT 
    GTAGATTCGA TGTAAATTCA TGGCTTAAAC ACAATAATAT GATGAAAATC 
    GGTCCGGTTG GC

    Gene models with high sequence identity

    1. AT5G42930.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 3e-84; Score: 309.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 2e-44
    HMMPfam Lipase, class 3 2.2e-37
    Gene3D no description 6.5e-39

    See the detailed result >

    AT5G42930.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G56630.1); Has 1515 Blast hits to 1509 proteins in 328 species: Archae - 0; Bacteria - 466; Metazoa - 48; Fungi - 299; Plants - 385; Viruses - 5; Other Eukaryotes - 312 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR