K15344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K15344

Determination of introduced cDNA(s)

  • J013048J01 - Rice Full-length cDNAs - Original: J013048J01

    full reading [+] show sequence

    Nucleotide sequence: J013048J01 - full reading 
    TGTGTGCCTC GCATCCTCCA CCACCACTAG TGCAGCCAAG TGCGTGCGTG 
    TGTGTGTGTG CGGACACCGT TGCTGCCGCC GCCGCCGCCG CCGCGCGCAG 
    GGTGGTGACA AGATGACGGC AGAGGAGGAT GAGCGGGCGG CGGCGGGGGA 
    GGACCAAGAA CGGCGCGGCG CACTTCGCCG TCAGCCCCGA GCTGATCCAG 
    AGCAGGAACA GGATCTACCT CAGGGGCACC GTCAGCAAGG AGCTCCTCAC 
    GCACAAGCAG GTCGTCCACC TCTCCCACAA GATCAAGGAT GGCATCTGGC 
    TGCAGCAGCA AAGATCAAAG CTGAAAGAGA AGCTGGGAAA TGAGCCCTCA 
    TACAAACAGC TGGCGCATTC GCTGAAGATA TCACCGCCCG AGCTACGATC 
    AAGGATGCAC GAGTCGTTTC TTGCAAGGGA GATGCTAACA ATGAGCAACC 
    TCCGTTTGGT CATTTCCATT GCCCAGAAGT ATGATAACCT TGGTGTTGAG 
    TTGGCTGACC TCATTCAGGG TGGTCTGATA GGGTTACTCC GTGGGATCGA 
    AAAATTTGAT GCATCCAGGG GCTTTAGAAT TTCCACTTAT GTATACTGGT 
    GGATACGCCA GGGTGTTTCA AGAGCATTAG CTGAAAACTC AAAAACATTC 
    AGGCTTCCAA CTTATCTGCA CGAGCGGCTG ATTGCGATTC GTGGTGCAAA 
    GTATGAGTTG GAAGATCAAG GAATTGCTCC AACAATAGAA AACATAGCAG 
    GGTCACTCAA CATATCAGAA AAGAAAGTAC TCAATGCTAC AGAGGCTGTG 
    AACAAGGTTC TTTCGTTGGA TCAACAAGCA TTTCCATCCT TAAACGGCTT 
    ACCTGGAGAG ACACTGCACA GTTACATAGA GGATCAAAAT GTCGCAAATG 
    ATCCATGGCA TGGATTTGAG GAGTGGTATC TCAAGGAAGA AGTCAACAAG 
    CTTTTAAACT CAACTCTCAA CGAGCGTGAG AGGGACATTA TCCGGTTATA 
    TCATGGCATA GGAAAACAAT GCCATACATG GGAGGATATT AGCAGACAAT 
    TCGGGTTGTC GAGGGAGAGG GTGAGGCAAG TAGGACTCAT CGCAATGGAG 
    AAGCTGAAGC ATGCTGCGAG GAGGAAAAAT TTGGAGGCAT TGCTTGAGGA 
    TTATTGAGTT GAGGGGCTTT TTGTTTGAGT CAGATCCACA AACACAGCGG 
    TTGTATATAC TCAGAAAACA TAGGGTACAT CCTTCAAAAG GCGTACTGCC 
    ACTCACATGA AAGTAATTAT ACGTGTACAT TTTGTGACAT TAGGGAGATG 
    CATGATCAAA ATCTCTATGC CTGTGTTATG ACCAAGGCAA TCAGGAAACA 
    GAGAGATGAT GTTTTTCCTT CAAGGTTTAC AATTATTCTG TAATATATAT 
    GTAAGTATGA TTTAGCTTGA TCAATAGAGC AACACTTAAA AGTTC

    Gene models with high sequence identity

    1. AT1G64860.1 [+] show detail - sigma factor A
      E-value: 1e-109; Score: 393.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA polymerase sigma-70 region 3 2.4e-13
    HMMPfam RNA polymerase sigma-70 region 2 3.7e-16
    HMMPfam RNA polymerase sigma-70 region 4 1e-10
    HMMTigr RNA polymerase sigma-70 1.7e-16
    PatternScan RNA polymerase sigma-70 factor 0
    FPrintScan RNA polymerase sigma-70 factor 7.1e-19
    FPrintScan RNA polymerase sigma-70 factor 7.1e-19
    FPrintScan RNA polymerase sigma-70 factor 7.1e-19
    FPrintScan RNA polymerase sigma-70 factor 7.1e-19
    FPrintScan RNA polymerase sigma-70 factor 7.1e-19
    Gene3D no description 2.6e-34
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 2.8e-13
    superfamily RNA polymerase sigma factor, region 2 1.6e-42
    superfamily RNA polymerase sigma factor, region 3/4 2e-15
    superfamily RNA polymerase sigma factor, region 3/4 6.4e-07

    See the detailed result >

    AT1G64860.1

    Model type
    Protein coding
    Short Description
    sigma factor A
    Curator Summary
    Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme
    Computational Description
    sigma factor A (SIGA); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23164 Blast hits to 23156 proteins in 2779 species: Archae - 0; Bacteria - 16620; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 18; Other Eukaryotes - 6292 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR