K15403

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15403

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15403

Determination of introduced cDNA(s)

  • J023130H04 - Rice Full-length cDNAs - Original: J023130H04

    full reading [+] show sequence

    Nucleotide sequence: J023130H04 - full reading 
    GGCTCCTTCT CCCCTCCCGC CGCCGCCGCC TCGCTTCGCC GCAGGAGTTT 
    GCAAAGATGG TGGTGCCGTT GCTGACGAAG AAGATCGTGA AGAAGCGGGT 
    GAAGCAGTTC AAGAGGCCGC ACAGCGACCG CTACATTGGC CTCAAGACAA 
    GCTGGCGCAG GCCAAAGGGT ATTGACTCTC GTGTCAGGAG AAAGTTCAAA 
    GGATGCACCT TGATGCCCAA CATTGGATAT GGTTCTGACA AGAAGACAAG 
    GCACTACCTT CCCAACAAGT TCAAGAAGTT TGTGGTGCAC AATGTCTCTG 
    AGCTGGAGCT GCTTATGATG CACAACAGGA CATACTGCGC TGAGATTGCT 
    CACAACGTCT CCACCCGCAA GCGCAAGGAG ATCGTCGAGC GCGCTGCGCA 
    GCTGGACATC GTGGTCACCA ACAAGCTTGC CAGGCTCCGC AGCCAGGAGG 
    ACGAGTGAAA TTTTCTGCAG TTTTTCGTGC TTATGGCTGC ATTGTTCGTA 
    GGGCAGTGCC TTGGTACCTT AAAATTATCC ATTTTGTGTT GCTGTTAGAT 
    TTGCCCGTAT GGACATCATT TTGCTGTGAG TGACCTGTCT AGTTTTAGCA 
    ACAATGAGAT AAAAAGACTT TCAGCTTTTC ATCATCATAA ACTTATGTGG 
    TTTCTCTTGA GCGCTCCAAG TTTTCTAGAT CCTGGAAACA CTTGTTAGTT 
    ATTATTGTCC TCTATGAGAA TACAACTAAA TCAATCCATT ATTAT

    Gene models with high sequence identity

    1. AT4G18100.1 [+] show detail - Ribosomal protein L32e
      E-value: 3e-55; Score: 211.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L32e 4.6e-53
    HMMPfam Ribosomal protein L32e 2.5e-48
    BlastProDom Ribosomal protein L32e 5e-57
    HMMPanther Ribosomal protein L32e 3.1e-69
    HMMPanther 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RN 3.1e-69

    See the detailed result >

    AT4G18100.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L32e
    Computational Description
    Ribosomal protein L32e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: Ribosomal protein L32e (TAIR:AT5G46430.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR