K15413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15413

Determination of introduced cDNA(s)

  • J023015F07 - Rice Full-length cDNAs - Original: J023015F07

    full reading [+] show sequence

    Nucleotide sequence: J023015F07 - full reading 
    TATCCATCCT CGACACCACC GTCTCCGCTT CCCTTTCCAT TCGCGCCGCC 
    ACCTCGCCGT CGCACCCAGC GGCGGCGCCG CCGTGCCGGA GGAGCGGCGA 
    TGTGGTGCCA GTCGTGCAAG GAGGAGTACG AGGAGGAGGA CGCCGGGACG 
    TGCAAGGAGT GCTACGAGGA GGCGAGCGAG ACGGAGGAGG AGCTCAAGCG 
    CGAGATCGAC GACCTCCGCT CCCGCCTCCA CTTCCTCCGC CTCCCTTCCC 
    CTTCCCTCGA CGCCTCCTCC CTCTCCCACT CCGACCTCCT CCTCCACGCC 
    ATCCCCGCCG ATGCGCCCGC CCGCCCCGAC ACCCCCGCCG TCCCCGCCCA 
    CCGCGTCATC CTCGCCAGCA GATCTCCTGT TTTCAGAGCT ATGCTTGAGA 
    ACGAGATGGA AGAGAGCCGG AGTGGCATCA TCAAAATATA CGATGTGTCC 
    TACGACGTCC TTCGTGCTTT CGTCCATTAC ATGTACACAG CAGAAGCTCT 
    CCTTGACGAG CAGATGGCAT CTGATCTCCT GGTGTTGGCT GAGAAGTACG 
    AAGTGAAGAA CCTGAAGGCC TACTGTGAGA AATTCTTAAC ATCCAAAGTG 
    AGCAACGACA ATGCCATCAC GCATTATGCG TTTGCGCATC GCCACAGCGC 
    GAAGCAGCTG CTCGAGACAT CCCTGGCAGC GATCATGGAC AACATGTCAA 
    CGCTGGCAGA TCGGGAGGAA TACAAGGAGC TTGTTGAGAA GGACCCAAGG 
    CTTGTTGTGG AGATATATGA AGCCTATCTG AACAGACAAG TGAACACTGC 
    TGCTGGGAAG GAGACAGATT CCAGTAGTAG GAAGGGGTAA TTCAAAAGAA 
    AACTGCTATC AGAGATGTAA TTAATGTTCT AACCAAGCTT TTGCATGTTC 
    ATGCTAGGCA AAGACTGGCA CATCAAATTG TCATCCTGCG GTGTAGGCGC 
    AGAACAGCTA TTTCTGTATA TGCTTGAATT GATACTGTGT GCTCGCTACT 
    GATAGAATGA GATCTATTGC CATCTTTATG TAACATATAG GTCAACTGAT 
    ATGTGATGAT CATCAAACAC ACTCAGTATG AACAAAAAAC TAAGTGTAAA 
    CTATTTGCAA CGTTGAACGG TTAAATTGAT TACCAGGGCT CTGT

    Gene models with high sequence identity

    1. AT4G08455.1 [+] show detail - BTB/POZ domain-containing protein
      E-value: 7e-63; Score: 238.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D BTB/POZ fold 7.6e-22
    Coil coiled-coil 0
    HMMSmart BTB/POZ-like 7.4e-20
    ProfileScan BTB/POZ-like 16.776
    HMMPanther UNCHARACTERIZED 3.3e-61
    HMMPanther Kelch related 3.3e-61
    superfamily BTB/POZ fold 8.4e-24
    HMMPfam BTB/POZ 2.3e-23

    See the detailed result >

    AT4G08455.1

    Model type
    Protein coding
    Short Description
    BTB/POZ domain-containing protein
    Computational Description
    BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G01640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR