K15417

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15417

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15417

Determination of introduced cDNA(s)

  • J023001I20 - Rice Full-length cDNAs - Original: J023001I20

    full reading [+] show sequence

    Nucleotide sequence: J023001I20 - full reading 
    GATTCCAGAG CTCGAGGTGG AGATCGCGGG GAGAGGAAGC GAAACAACGA 
    TAGGAGGAAG CGAGACAACG AGAGGTGGTT TCTCGGTTGC GGGTGAGTCG 
    TGTTGAAGTG AGCTATGGTG GCGTTGGAGA CGTGTGCGTC GCGCTGAAGG 
    CCCCCGGCGT GTGGCGCGTC GACCCGGTGT TCGCCGCGGT GGGTGACCGC 
    GTCGTCGCCC TCGGCGGCGC GTGCCAGTTG GCGCTGGGCG AGGGCGAGGA 
    CGCCTCGGTG GTGGAGGTAC ACGAAAGCGG CAGCTGGACG GCCTGCGGTC 
    CGATGCCAGC CGAGCTGCGG GAGTCCGCGG CGGCGACGTG GCTCTCGGTG 
    GCCGCGACGG ATCAGCGAGT GTACCTCACA GACAGATCCA CCGGGTGGGC 
    AAGCTGGTTC GATCCGGCGA AGCAGCAGTG GGGACCCACC TGCCGCCTCC 
    GCCCTGACGC CACCGTCTCC ACATGGGGCC TCGCCCCCGG CCGCGGCGGC 
    GCCGAGCGGC TCGTCCTGTT CGGAGCGAAG CGCTGCGGTA GAGCCGAGCA 
    AGCGAAGAGC AGAGTCGTCA TCCAAGCGTG GGAAGTGGAC GGCGACGGCC 
    TCGCGCTGTC CCGTGGCGCG GCGCACGACA CGATGCCGGG GGAGATGTCC 
    GAGAGGCTGT TCCCCCGTGA CGAGGACGGC GATGAGGAGG ACGAAGAGGA 
    GATGTCGCCG TCGATCGGGG TGTGCGGCAA CGCCGCCGGA GGGTACGTGT 
    ACAATGCGGC CGACCCGACA ATCGGAGCCG TGCTCTACGA GCTACGTGAC 
    GGGGTGGGCA GCGCCGTGGA GCGATGGGAA TGGGTGCCGT GCGCGCCCTC 
    GGTCGAGGCC GAGCCGTTGG GACGCTTCAT CCTCGCGTGT TCGCCGGTGG 
    GGCTGGACGA GCTCGCGCGT GGTCAACCAG CCGCATGTAC AACCGCACAG 
    TGAACTCATG ACTGCCGACG CCCGTCCAAA GCAAGTTAAC CTCAAAGGTT 
    GCTTTTGTAA ATAAAGTCCC GCGCAGTAGC ACGGCTACTC GCTAGCGTAC 
    ATAAAAAATT ATGTTAAATT TTCTTTACAC ATGATTTTCT TAGAAGTTAT 
    TAATAGTTAT CCCGTTGGCT TATAACATTA TAAAAAGTCA AATATTGGTT 
    TCCAAGTC

    Gene models with high sequence identity

    1. AT1G23390.1 [+] show detail - Kelch repeat-containing F-box family protein
      E-value: 1e-14; Score: 78.20

     

    InterPro Scan Digest

    See the detailed result >

    AT1G23390.1

    Model type
    Protein coding
    Short Description
    Kelch repeat-containing F-box family protein
    Computational Description
    Kelch repeat-containing F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G24760.1); Has 146 Blast hits to 146 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR