K15425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15425

Determination of introduced cDNA(s)

  • J033080D15 - Rice Full-length cDNAs - Original: J033080D15

    full reading [+] show sequence

    Nucleotide sequence: J033080D15 - full reading 
    GACGAACGCC TCGTCGCAAC AGCTACAAAC GCCCACATCA CACGCAGAAA 
    TCCGCATCAA CAGCCAGCCA TGGCGTCCAC GCTGACCAAC GTCGGCCTGT 
    CTACCCCGGC GGCGGCGGCG TCGTCCCTCG TTAGGCCGGT CGCCGGAGCT 
    GGACGCGTGG TGTTTCCCCG TGTTGGCCGC GGCGGGTTCG CGGCGGTGAG 
    GGCGAGCGGG CCGGCGACGC CGCCGGACAT CTCGGACAAG ATGTCGGAGA 
    GCATCGACAA GGCGAAGGAG GCGTGCGCGG AGGACACGGC GAGCGGCGAG 
    TGCGCGGCGG CGTGGGACGA GGTGGAGGAG CTGAGCGCGG CGGCGAGCCA 
    CGCGCGCGAC AAGCTCAAGG AGACCTCCGA CCCGCTCGAG GCCTACTGCA 
    AGGACAACCC GGAGACCGAC GAGTGCCGCA CCTACGACAA CTGATTCTTA 
    CCATTATATG TTTGCTAATC TCTCTGTAAT TAATTATAAG TTACTGGGTT 
    GAAAAGATTA TTTGTCGTAG AAGACAGAGG GGAGTTTGGT GGAATGGTGG 
    TATTTACGGA TAGTTCAAGG GGGAAATGGG AAAAAAAAGG TTTTTTACAC 
    TTGTTTGTCT GGATGAATTT GTATGGAACT TTTCTGCTTG ATAATTTTCG 
    CATGTGTTAG TATTTGTATA TGATGATATA AGTGGGAAAT AAATCATCAA 
    ATTTTCCAGC

    Gene models with high sequence identity

    1. AT2G47400.1 [+] show detail - CP12 domain-containing protein 1
      E-value: 2e-26; Score: 115.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G47400.1

    Model type
    Protein coding
    Short Description
    CP12 domain-containing protein 1
    Curator Summary
    CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
    Computational Description
    CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR