K15438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15438

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15438

Determination of introduced cDNA(s)

  • J013002G12 - Rice Full-length cDNAs - Original: J013002G12

    full reading [+] show sequence

    Nucleotide sequence: J013002G12 - full reading 
    GGGGTAACTC CCCACCTTAA ACCCCAGACA CCCTCAAAAA CCCTAATCCC 
    CTCCCTCCCG CCGCCGCCGC CGCCGCCGCC GCCATGGGCT CCGCCTCCGC 
    TTCCTCGCTC CCGGCCTCCG CCGGCTTCGG CGAGAACCTG GTCCTCATCC 
    TCGACTTCGG CTCGCAGTAC ACCCACCTCA TCACCCGCCG CGTCCGCCAG 
    CTGGGGGTCC TCTCCCTCTG CGTCTCCGGC ACGGCGCCGC TCGCCTCGCT 
    CGCGGGCCTC CGCCCCCGCG CCGTCGTCCT CTCCGGGGGG CCCCACTCCG 
    TACACGCCTC GGGGGCGCCC ACGTTCCCCG AGGGGTTCCT CGAGTTCGCC 
    GCCGGCGCGG GCGCCCACGT CCTCGGCGTC TGCTACGGGA TGCAGCTCCT 
    CGTGCAGTCC CTCGGCGGCG CCGTCGAGGC CGGCGAGAAG CAGGAGTACG 
    GGAAGATGGA GGTGGAGGTA ACCGCCCGCT CCTCGGCGCT GTACGGGGAG 
    GGGGAGGTCG GGAAGCGCCA GACGGTGTGG ATGAGCCACG GGGATGAGGT 
    GGTGAGGCTG CCGGAGGGGT TCGAGGTGGT GGCGCGCAGC GTGCAGGGTG 
    CCGTCGCTGC CGTCGAGAAC CGTGAGAAGC GCTTCTATGG GCTTCAGTAT 
    CACCCTGAGG TGACACATTC ACCCCAAGGA ATGGAAACAC TGCGGCGCTT 
    CCTTTTTGAT GTTTGTGGGA TAAAAGCTGA TTGGAAGATG CAAGATGTGC 
    TGGATGAAGA AATTAGGACA ATCCAAAGCA TGGTTGGGCC TGATGAACAT 
    GTGATTTGTG CTTTATCTGG TGGAGTTGAT TCAACTGTTG CTGCCACTCT 
    GGTTCACAAG GCAATAGGGG ATAGACTTCA CTGTGTTTTT GTTGACAATG 
    GCCTATTAAG ATACAATGAG AGGGAACGGG TAATGTTAAC CTTTGAAAGT 
    GACTTGCACC TTCCCGTCAC ATGTGTTGAT GCATCTGAGC AATTTCTTAG 
    CAAGCTAAAG GGTGTCAAAG ATCCAGAAAT GAAGAGAAAG ATAATTGGAA 
    GGGAATTCAT AGCAGTTTTT GATGATTTTG CTCACAAATT AGAACAGAAG 
    ATAGGAAAAA GACCTGGATA TTTAGTTCAA GGGACACTGT ACCCTGATGT 
    GATTGAATCA TGCCCACCTC CTGGAAGCGG AAGGACACAT TCTCATACCA 
    TCAAAAGCCA TCACAATGTT GGTGGTCTTC CAAAAGATAT GAAGTTAAAG 
    CTAATTGAAC CACTCAAGCT CTTATTTAAG GATGAGGTAC GGAAGTTGGG 
    GAGTATTTTA AATGTCCCAG AGTCATTCTT GAAGCGACAC CCATTTCCTG 
    GGCCTGGTCT TGCTGTACGT GTCCTAGGTG ATGTTACAGA AGGCAATGCT 
    TTGGAGGTTC TTCGTCAGGT TGATGAAATA TTTGTTCAAG CCATTAAAGA 
    TGCAGGTCTC TATGATATAA TTTGGCAAGC ATTTGCTGTG TTTTTGCCTG 
    TACAAACAGT GGGAGTTCAG GGTGACCAGA GAACTCACTC CAATGCAGTT 
    GCTTTGAGGG CAATTACTAG TGAGGATGGC ATGACTGCAG ATTGGTATTA 
    TTTTGAGCGT GAGTTCCTGG TAGATGTGGT CAACAAGATC TGCAACAATG 
    TGCGAGGTGT TAACCGTGTT GTCCAGGACA TCACGCAAAA GCCACCTGCG 
    ACAGTGGAAT GGGAATAGGA ACTTCGTGCT CTGAATTCTG ATGCCGTGGA 
    GTGGCCTACT TTTATGCTGC AATGGAGTGG GAATATCAAC ATATTCCCAT 
    ATTATACATA TAGCTGTTTA TTACTAGATT GTTTGTTTAC ATCCTTTGAC 
    AAATCCCTAT TTGTCAACCT GTGATAGATT TTGAACTGAG AAAAGCTTTG 
    AACTGCACTT ATTAACTGTG CTTTCTATTC TTGAATAGAT ATCTTCACCT 
    TTGAAGACCT TTTATCTTTT GGAGTAAATC TTTGTTGCT

    Gene models with high sequence identity

    1. AT1G63660.1 [+] show detail - GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative
      E-value: 0; Score: 829.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Adenine nucleotide alpha hydrolases-like 1.1e-53
    superfamily Class I glutamine amidotransferase-like 3.7e-53
    superfamily GMP synthetase C-terminal dimerisation domain 9.6e-44
    HMMPanther GMP SYNTHASE 6.6e-248
    HMMPanther GMP SYNTHASE-RELATED 6.6e-248
    ProfileScan Glutamine amidotransferase type 1 31.49
    HMMPfam GMP synthase, C-terminal 1.9e-35
    HMMPfam Glutamine amidotransferase class-I, C-terminal 2.5e-32
    HMMPfam Asparagine synthase 0.00013
    Gene3D no description 2.4e-49
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.1e-72
    Gene3D no description 4.7e-39
    HMMTigr GMP synthase, N-terminal 3.2e-82
    HMMTigr GMP synthase, C-terminal 2.9e-190
    FPrintScan PRICHEXTENSN 0.00000000071
    FPrintScan PRICHEXTENSN 0.00000000071
    FPrintScan PRICHEXTENSN 0.00000000071
    FPrintScan PRICHEXTENSN 0.00000000071
    FPrintScan Glutamine amidotransferase superfamily 0.0000075
    FPrintScan Glutamine amidotransferase superfamily 0.0000075
    FPrintScan Glutamine amidotransferase superfamily 0.0000075
    FPrintScan Anthranilate synthase component II/delta crystallin 0.0001
    FPrintScan Anthranilate synthase component II/delta crystallin 0.0001
    FPrintScan Anthranilate synthase component II/delta crystallin 0.0001
    FPrintScan Anthranilate synthase component II/delta crystallin 0.0001
    HAMAP GUAA_MF_00344 48.951

    See the detailed result >

    AT1G63660.1

    Model type
    Protein coding
    Short Description
    GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative
    Computational Description
    GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), GMP synthase, C-terminal (InterPro:IPR001674), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 20887 Blast hits to 20751 proteins in 2946 species: Archae - 738; Bacteria - 12164; Metazoa - 273; Fungi - 298; Plants - 185; Viruses - 0; Other Eukaryotes - 7229 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR