K15441

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15441

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15441

Determination of introduced cDNA(s)

  • J033112E21 - Rice Full-length cDNAs - Original: J033112E21

    full reading [+] show sequence

    Nucleotide sequence: J033112E21 - full reading 
    GGCCGCGAGC AGCGCCGCCG TCGCGTCGCG CCGATCTCCA CATCACCGGC 
    GGCGACTTGC GAGCACCGTG CCGGGCGCCT ACTGCTTCCG GCGCGTACTC 
    GACTCCTTGC GCCAAAGTCA ATCTCCCCTC GCACCGTCTT CTCGGCCTCA 
    GACTCCCTTC TCCGACTCGC TAGTTCGCCC CGCCCCGCCG CGCCTCGCCC 
    TCGCCTCGCC GCCTGCGCCG GTTTCCATCC ATCCCGCGAC GGACGGGAGC 
    ATCCGTCGGG TGCCGTCGTC CTGCTGCCTC CGCCTCCGGT TCGGAAGATG 
    ATGAGAAACA ACCAAAACAC ACAAGTAGAA GGAGCAAGCG CAACTAAGAA 
    GCGGAAGACC TCATACTCTA ACTCCAACAG AGAAGATTCG TCACCAGTTG 
    TGGATGGCCT CACACGCATA TTGCGCAGAA ATCTTCTCCC CCGTGGTTAT 
    CCTATGCCAT CTGAGTTCAC TGATGGTATG CACATGGTGA ATAACTTTGA 
    AGAATCTTTT GGAGACTTGG ATGACTGCAA TGAAGAATAC AGCAAAGTTA 
    ATTTAGTTGC TCTAAGAATA TCTCAGTCCG TTGTCTCACT TGCTTCGTTT 
    AAGGGGCGAA CGAGACTGTT TGCATGCACG GGTACAATTA TGGAGTATGG 
    ACCATCTAAA ATGAGCATTC TGACTTCCGC TAGTTTGGTT AGATGCACTA 
    AAGATGAAAA CAAGACAGAT GAAAAATTAA AGATTAAGGT GCGCCTACCC 
    AATGGCAAGC TTACCGAAGG AAAACTGTGG AACTATGATT TATATTATAA 
    TATTGCTGTT GTCAAAATCA AGTATTTCCC AGAACTTAGT ACAGCACAGA 
    TACATAATCA AGGGCAATCT AATGTTAAAT TATCTCAAAG TAAACTGGTC 
    GCTGTTGGAC GTGGCTATGA ATCTGGAGAA CTAATGGCTA CAGGTGGGAC 
    ACTGCTGTAC AAACCTAGCA AACTTGACTG CAAGGAACTC ATGACCTCCA 
    CTTGTAAGAT CACAAAGGCT GGGATTGGTG GTCCCCTTGT TGGGTTTGAT 
    GGAAACTTTG TTGGCATGAA CTTTTGTGAT AAGAAGGAAA CTCCTTTCTT 
    ACCAATCAAT ATAATTCGGA AATGTTTAAA GCACTTTGAT ATGTTTGGGA 
    GAGTTGTTCA GCCATGGCTT GGCCTGAGGA TTGGATCACT GAAACATGAA 
    AAACTGGATA TCCGTGAACA AATACATGGA AGCTTCTCCA ACACAGGTGG 
    CATTTATGTA AAAGAGGTTT TTGATGGATC CCCAGCAGCA GATTCTGGAA 
    TCAACGTTGG TGATGTTATT ACCAAGCTTG ATGGAGTCGA TCTATTCCAT 
    GCACAAGAGT TCTATGAGCT TATTTTGGGG AAATCAGAAG ATATTTTGCG 
    ACGTGATGAA GAGATGCTTT TCAAGGTGTC TATTCTAAGG CCAAGTAACG 
    GTTAACCTTC CGTGCAATTG TCAATGCTGA AGTGGTTGAC ATGAGTAGGA 
    AGAACAGATG GCCTGTACCT AAGGCGGAGT GGCTATATCC ATGTACGGAC 
    GATAGATGTG ATGAAATTGT CGCGCCTGAT CCGATAGTTA TTCGAACCTG 
    TGAAGATAGC TATTATTTAC CCGCCCTTGA TGAGTCTGAA CTAAGACTAT 
    ATTACGGTGA AGAATGAGGT GGAGAAATCT TGCATTAATC GAGAAGAAAT 
    CTTGCATTAA TCGAGAAGAT ATGCTGAGAT ACTTAATGGA ACATGCACCG 
    CAAGTTTTTG TTGACATTCA TATTTGGCAA CTGAATAGGG CTACAGGAGT 
    GAAAAAAAAT TGCATGTCTA CTAATATTAG CAAATTGCAT CCTTTGCCAG 
    CTGAGTAATA TGAATTGTGT TAATGCGGAG TTGTTCCAGC AAGATGTTTT 
    GTTTGGCTTT TCTGTTTTTA ACAAGTTTAT GAAAGCTTGG GT

    Gene models with high sequence identity

    1. AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
      E-value: 5e-18; Score: 90.10

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PDZ/DHR/GLGF 10.697
    HMMPfam PDZ/DHR/GLGF 0.00000076
    Gene3D no description 0.00074
    Gene3D no description 0.00000000081
    superfamily Serine/cysteine peptidase, trypsin-like 5.2e-19
    superfamily PDZ/DHR/GLGF 0.000000000000059
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 0.00000000000015
    HMMSmart PDZ/DHR/GLGF 0.00000012

    See the detailed result >

    AT5G27660.1

    Model type
    Protein coding
    Short Description
    Trypsin family protein with PDZ domain
    Computational Description
    Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR