K15442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15442

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15442

Determination of introduced cDNA(s)

  • J023019E14 - Rice Full-length cDNAs - Original: J023019E14

    full reading [+] show sequence

    Nucleotide sequence: J023019E14 - full reading 
    GTTCTGTGTT TGGCACGTCC ACGACAGCAC GAGACGGGTT GGGGACTTGG 
    GGGGTTGAAG AAGCCAAGCT CTCCTTGGTT GGCGCGCACG TACGTTCGCT 
    TCGCTTCGAT TCGATGGCCA CTGGTGACCC AAACCCTACC ACCACTCCGC 
    CGTCGCAGCA GCTGCAAGGA GCAGATCCCC AACCCCAATC CCAGCAGGAT 
    GCCGCCGCCA ACGCCACTCC GGCGGCCGTG GCCGTGAGAG AGGATTATGT 
    CCAGAACGCC GTCAAGTTCC TCTCCCACCC CAAGGTCAGG GGCTCCCCCG 
    TCCTCTACCG CCGCTCCTTC CTAGAGAAGA AGGGCCTTAC CAAGGACGAG 
    ATCGACGAGG CCTTCCGACG AGTCCCCGAT CCGCAACCCA GCGCTACTGC 
    TACTGCTGCT GCTTCCCCTT CGCCTTCACA GCACCCCAAC AACCAGAACC 
    ACTCTTCTAC CGTTGTGCAA CCTTATGCAC CAAGGCAACC AGCAACACCT 
    GCTGGCTCTA TTATTGTTGC CACACAGCCC AAGTTCAGCT GGTACCGTGC 
    ATTCGTCGCT GCAGGGCTAT TGCTTGGTTT TGGAGTTAGT GCTGCTGTGT 
    TTGTCAAGAA ATTGCTCCTT CCTAGGCTTA AGTCTTGGAT CCGCAAGGTC 
    GTAGCTGAAG GTGATGAAAA CGAGGGCAGG CAAATTAAGT CCAAGATCGA 
    TGAGGAAACT GCTGAAGCTG TAAAAGCTTC TGCATCTGCT GTTTCTGCTA 
    TTGCCAAAAC TAACCAAGAA TTGCTTGCTT CAAAGGATGA AGAAAAGAAG 
    ATACTTGTGA CATTAACACA AGCACTAGAT TCCCAAGCAA AAGAATTGAA 
    ATCCTTATGT GAGTCTCTGA ACCGTAGCAG GGATTCTATA AATATTACCA 
    GGGAAGATAG GTTTTCTCAG TACCGGGCAT TGGAAGAGCA TGCCCCTTCT 
    GCTGCAAGGA ATGGGCCAGT TAACACTCCA TGGAGAGCCT CTCAGCAAAC 
    TAATATGTAT GGTGTGCCAA ACAGTGATTT TGGCTCAGGG AGGCCTTCAT 
    TTGCGTCAAC ACATAATGAA GCTACACCTG GATCATTTTC AAGATCGTAC 
    GTTGAGACAT CTGCTGCACA CCGAGGGGAT AATAGGTCTT CAGGGAGTAA 
    GCCATGGGAG ATGCAGCAAT ACTCACAGCA GAGGATTGGC TATGGATCCA 
    ACAGCCAGTT GAGTGATGAC GGATGCCCTG AAACTCAGGA CAACTATGGC 
    GGGGGACCTT CGTATTCGTA TCACCAGAAT CAGAATCAGA ACGGGAAGGC 
    TCCGGCTCCG GATATTCAAG CAGAGGAGGC CAGGCCATCG GTATACATAA 
    GTGGGGCTGA GGAAAGGTCG CCTCCGCCTC CGCCTCAGCG CCGCTGGGTT 
    CCCCCGCAGC CTCCGGGCGT TGTGATGCCG GAAGCTGTGG CTGCCATCCG 
    TCAACCAAAG TCCCTCGCAA AGCAACCGTC GAGCGAAGCT TCTCAAGAGG 
    CAGCCGGCGA GACGCATGCC AACGGTGCTT CAAGTTCGTC GCCTCTTCCT 
    GAAGAGGCGC TTGTTAATGG CAGTGCCGCC GGACGTAGTG AGATCGAAGA 
    ACAAGCAGAA GCCATCTAGA AACAATTTGT TTTAAATTGG GACGAGATGA 
    TGTTGAGAAG CTGGAATATG TATTTATTTT GGATCAGTAC GGGAACGCCT 
    ACTGTGGTAA CAGAAGATCT CGATTTGTGG TCGAGTTTAT ACTACACTAC 
    GTCAAATAAC AAGTGTTGCT ACTAGCTGTG ACTGTGAGTA ATACCGATAC 
    ATTACATTAC ATTACATACA TACACGGTGA TTAAAACAAA CAAGCAGACA 
    TTTTTACTTG GTTATGTTAT GACAGGCAGA GATGGCATAT GTTAAGGAAG 
    G

    Gene models with high sequence identity

    1. AT5G62810.1 [+] show detail - peroxin 14
      E-value: 1e-37; Score: 155.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62810.1

    Model type
    Protein coding
    Short Description
    peroxin 14
    Curator Summary
    mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)
    Computational Description
    peroxin 14 (PEX14); FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: peroxisome organization, protein targeting to peroxisome; LOCATED IN: cytosol, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane anchor protein Pex14p, N-terminal (InterPro:IPR006785); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G62800.1); Has 366 Blast hits to 354 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 149; Plants - 89; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR