K15444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15444

Determination of introduced cDNA(s)

J033124C01 - Rice Full-length cDNAs - Original: J033124C01

full reading [+] show sequence

GAACTGCAAA CCGCTGCGGT CTCGGAAACC CTAGCTCTCG CCCCCTCCCC 
TCCCTCTCCG CCCGTCGCCG CGCGGGTCGC CTCCTCCTCT CCGCCGCCAC 
CGCCGCCGCT GACATGGGCT CCGATGCGGA CATGGAGGAT TACGGGTTCG 
AGTACTCCGA CGACGAGCCG GAGGAGCAGG ATGTTGACAT CGAGAACCAG 
TACTACAACT CCAAAGGTAT GGTTGAGACA GACCCTGAGG GTGCACTTGC 
TGGCTTCGAT CAAGTAGTAC GTATGGAGCC TGAAAAGGCT GAATGGGGTT 
TCAAAGCTCT GAAACAAACA GTGAAGCTGT ATTATAAGCT TGGGAAGTAC 
AAAGAAATGA TGGATGCCTA TAGGGAGATG TTGACATACA TCAAATCTGC 
TGTGACACGT AACTACAGTG AGAAATGTAT AAACAACATT ATGGATTTTG 
TCTCCGGATC AGCTAGTCAA CACTTCTCTC TTCTGCAAGA GTTCTACCAG 
ACAACACTGA AAGCACTTGA AGAGGCAAAG AATGAGAGAT TATGGTTTAA 
GACAAACCTG AAGCTTTGCA AAATTTGGTT TGACATGGGG GAGTATGGCC 
GGATGAGCAA GATACTGAAG GAGCTGCATA AATCTTGTCA AAGAGAAGAT 
GGTTCTGATG ATCAGAAGAA AGGCACACAA CTTTTGGAAG TCTATGCTAT 
TGAGATCCAA ATGTACACTG AAACAAAGAA CAACAAAAAA TTGAAGGAAC 
TATATACAAA AGCTCTTTCC ATCAAATCAG CGATACCTCA TCCAAGAATC 
ATGGGTATAA TTCGTGAATG TGGTGGAAAG ATGCACATGG CTGAGAGGCA 
ATGGGCAGAT GCTGCAACTG ATTTCTTTGA AGCATTCAAA AACTATGATG 
AAGCTGGCAA TCCGCGGAGA ATTCAATGCC TGAAATATCT TGTTCTTGCA 
AATATGTTGA TGGAATCTGA AGTGAATCCC TTTGATGGGC AAGAGGCTAA 
GCCGTACAAA AATGATCCTG AGATCCTCGC CATGACAAAC TTGATTGCAG 
CATATCAGAA GAATGACATC ATGGAATTTG AAAAGATTCT AAAGAGCAAC 
AGAAGAACAA TAATGGACGA TCCTTTCATC CGTAATTATA TTGAGGACCT 
ATTGAAGAAC ATCAGAACTC AAGTTCTGCT CAAGCTTATT AAGCCATATA 
CTAGAATCAG GATTCCATTC ATTTCACAGG AGCTAAATTT CCCAGAAAAG 
GATGTCGAGC AGCTCTTGGT CTCACTCATT CTGGATAACC GAATCCAGGG 
CCACATAGGT CAGGTGAACA AGTTACTAGA ACGTGGTGAC AGGTCGAAGG 
GAATGAGGAA ATACCAAGCC ATAGACAAGT GGAATACTCA GCTGAAGAAC 
ATCTACCAAA CGGTGTCCAA CAGAGTTGGG TGAGAGAGAT AGCAGGATGC 
CTGGGCTGCA CTGCGCTTGG CACCTGCTTG CACGTTTTGT TGTGGTGGGT 
AAATGCAGCG AGTGTTTGGT GCGTGCATTA CATTTGAGAT AGGCTCTTGG 
ATAGGTAAAG AAAAAAACAG TCTCGTGTAT TAAACATGGT ACTCTTTTGC 
GCGCCATGTG AAGATGCTGG GATTTTGTCC TGAACTGAAT CTATCTGCAA 
ATTCCAACCC CTCTGAAACT ATACTAGCGT CAATGGCTCG AAACTTTTGG 
TTTTGTTGGC ATTGCCGCAC TAGCAAATTT TGGTATGGTA GAGAGAATGT 
TTGGTTCCGT GC

Gene models with high sequence identity

AT2G26990.1 [+] show detail - proteasome family protein
E-value: 0; Score: 741.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	PCI/PINT associated module	1.2e-64
HMMSmart	Proteasome component (PCI) domain	2.1e-19
Gene3D	Winged helix-turn-helix transcription repressor DNA-binding	6.5e-05
HMMPanther	COP9 SIGNALOSOME COMPLEX SUBUNIT 2	1.3e-280
HMMPanther	26S PROTEASOME SUBUNIT S9	1.3e-280
HMMPfam	Proteasome component (PCI) domain	2.3e-24
superfamily	"Winged helix" DNA-binding domain	3.2e-15

See the detailed result >

AT2G26990.1

Model type: Protein coding
Short Description: proteasome family protein
Curator Summary: Represses photomorphogenesis and induces skotomorphogenesis in the dark.
Computational Description: FUSCA 12 (FUS12); INVOLVED IN: cullin deneddylation, photomorphogenesis, protein catabolic process; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: non-ATPase subunit 9 (TAIR:AT1G29150.1); Has 881 Blast hits to 877 proteins in 239 species: Archae - 2; Bacteria - 9; Metazoa - 323; Fungi - 235; Plants - 190; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link: InterPro Scan - TAIR