K15505

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15505

Determination of introduced cDNA(s)

J013026E19 - Rice Full-length cDNAs - Original: J013026E19

full reading [+] show sequence

GATACGCGAC ACAGAACACG GGCTTCCCTC CATGAACTCC TCCTCCTTTG 
TCGAAGAATA TCTTCCAGCA GGTGAGACAT TGGATCTGTC CCTGTCAATA 
GCTACGAGCA AGATTTATCG ATGCAGCGTT GGTCAGGGGC CTCTCCGTCT 
ATCTGTTCCT ATGGAACCTG CCGGCCGGGG GCTGCTTCCA TGGGAGAGAA 
AAAAAATAGT CTGGCGGTGG TTCGTTCCAT AGAAGCACGG CGGAAGTAGT 
CTGGCTGCGG TTCGTCCCAT TGAACCGGAT CTGACCTGCA ATGGGTGAGA 
TCGATGCCGC AGTTACCCGC CACAGGCCAG ATCGATCTAC CGGCGTCAGT 
GATATCGCCG TCGAACAGTT CCCATGTTCG AGATCGAGAT GAACTAACGG 
CGGTCGGGCG AGATCGATCT ACCGGCGTCA GTGATATCAC CGGCGGACGG 
GGTTCTGATC TCCAAGGGGA GTAAAGTCTG TCCTGTCTGG TGGTGTTTTT 
TACGATATTG TATAGAACAA CGGCGACGGC AATGATATCG ATGAAAATAA 
TTTGTCGCCC TGTTTCTATT CTTCAGATAG ATCGTCGCCA TGATCTCTCC 
AAGGAGGGAA ATAACGGTGA TGGCAATGAT ATCGATGAAA ATAAGTTGTC 
GCCATGCATC CATTCTTCAG ATAGATCGTC GCCATGACCT CTCCAATGAA 
GGGGTGGCAG TTTGCGTGCA GGGGCTTGGG ACATCTTTAT GTAGGATTTT 
GGCTGGGTAT TGCGCTCTGC ATCATCCATG CATCGCCGTC CTAGGTCTAG 
AACTTATAAG AAAGCTGAGA TGAAATCGGC TATCCCTACA TGAGAGGGAA 
GTCCGGTTCG GGGTGTCTAC AATTTTCCCT CCACGTCGAA AGAACAGAAC 
ATTTGCAGCA GGAGGAGGAG GTGCTGCAGT GAGTGGCTGG AGGAGATGCT 
GCAGTGAGCG GCTGGAGGAG ATGCTGCAGT GAGGAGGAGG AGGAGATGCT 
GCAGTGAGGA GGATGAGGCG GCTGCAGTGA AAGAAAATAC ACCAGGGGAC 
AGATCCAATC ACTTGAAGTG AAAGAGAATA CACCAGGGGA TAGATCCAAG 
CACTTGAAAT TGGTGTAAAA TGTTGAAAAA GATCCAAATA AAGAGACAAT 
TCTGTCAGTT TCAGTTGCTG GTGCCCAAAA TGGCAGGGAA GCTCAATGGA 
CTGTTGATAG GACTGTGTAC ACTTATGCTA ACTTCTATGA TGATTTTAAA 
GCCAAGGTTT TTGACTTTGG TGATAGGCTC AAGATTTCGT TTATAGAATT 
AGTTCAGCGT CAAGAAAATG ATCTATTGCT TGGATCTTTT GAGAAAGAGT 
TAAGATTAAA AGTACTTCTA GCGGATGAAC ATGATGAGGT ATCCATAAAC 
ATTTGCTTAA TCCCACACAT GTTCGGTTGT TAAGCTAAAC GATTATCTAA 
ATTTGTTAGG AGTTAAATGA CTATCTAAAT TTGTTAGGAG CTAGCATGGT 
TGTTAAGTTA AATGGCTCTA TCTAAATTTG TTAGGAGCTC CAAAGTGAGA 
GGTTTGTCAA GATGCAGGGG AAGCATCAAC CTGTTGGTTT AAAAAATGAG 
AAAAATAAGC AAGTATTGTT CCTTTTTTTT CCATCTTTTT TGTCAGTGTT 
TGTTTAAGTT CCATGTCCTT AATGTTTTGT GTATAGCTGT TTTGGTAATG 
TAGTGCTCCA ATGTTTGGCA ATCACGGAAC CATTTGTTTC AAGACTCTTT 
GGACAACAAT TTGGAGAAGA ATGTATGATT TAATCACAAT TTTTTTAGTA 
AAAAAAATAT TTGTTTAAGT ACTAAACGTG TAGTGTTTTA GGCCTAGGAA 
ACTGTCACGC TTGCGACCTG CGCCGTGATC TGAAGAGGAT AAGAAAAACT 
GGTGCACCAG CCTTCTTTCC CACTATCTTT AAGCATATTC GATCATTAGG 
TGGTGATTTT GAGGATGGCT TGGGACGTCA TCGTGACTCT TCTGAGTTCT 
TATTGTAATA ACTTAACTCA ACTTTTGTTG TTTTAGTTTG CATTTCAGTT 
ATTTTTGTGT GTTATAGATT ATTTTTCTTT TCCAGGTTAT TACTACAAAA 
GTTATTTGAT GGTACACATG GATGTTTAAC AGATATGTTT GGTGGAAAAT 
TCCGTCGCAG TAAAGTTTGT TCCAAATGTG GAATGCTTTC TAATTCTGAA 
GAAGATTTTA CTTTGCTAAT GTTTAATATA CCTCATCGTG AACAAGTTGT 
TGCTGCAACA TTAGAAGATT GTCTTGATCA CATTGTGGAA GAAAACGTAC 
ATGATTCATT ATCCCGTTGT GAAAGCTGTA TGAATGACCA GAAGTCAACC 
AGTAAGTGTA CATTTCATGA AACTAGAGAT GTTGTTATTG TGTTGCAAAG 
ATTTGAACCA CTTACACTTG GGGGTTATCG AAAGATTGGA GAACTAATTA 
ACTTTCCTAC GGAGCTGGAC ATTTCACCAT ATATGAGTGG TGTTGTAACT 
GACAAGCATA TATATGAACT GTTTGGAATT ATAGTTCATG AAGGCGGTGT 
TATAGGGGGT CACTATAGAA GTTACGTGAA AACAAACTGT TGGTATGAAG 
TCAGTGATAG AGATGTGAAA AGAGTAAATG AAAATTTTGT CCTAGGGGCA 
CAAGCATATA TCCTGTTCTA CAACAGGAAA GAAGAGGCCA AATCATTCGA 
TGAGGTTTTA GCTTTTGCTG CTACAGCTAT GTCTTCATCT GATGCCGTGC 
CTACATCAAC TTCAAAAGAT TACACTGAAA GAACATTATC ACCTGAAGTA 
TCGTCTGCTG CTCTGTCATG TTGGATTGAT GCTGCACGGG TCCTTGAGCC 
CAAGAGTTAC TCAGACCAGG ATATCCTAGA AAAATATATC ATTTGTATGG 
ACCGTGACAG TTCAGATGTA TCTGAGAGGA TAAGGAATGC CATGCGGAAT 
TGTAATGAGT CCAGACAGGA GTATCATTTT AATCTCCCTA CAACGGATGG 
ACCTTTTTAT GATGACAACT TGGGGCAGTA CTGTCTTCTT CGGGGAGCTA 
GATTTCGAAC CATTAGTACA AGCAGTAATG TAGAAGCGAA GAGAGATAGG 
GCTGTTAGAA TGCACTTCCT TCTTTCTGAA ATCTTAAAAC TCCTACAGCT 
GAAAAAAGTG ATTGACGTTG GAGCTATTGG CTATCTGGAG AAATTTAAGT 
TTGGGAATTA TTCCAGGAGT GCTCTTTTAC GGCGAATTAA TGATGCATGT 
ATGCTCTTGG GGACTAACAG ATTATCCCTT AATATCTCAG TTATGTCAAG 
AGGATCTATC ATTGGGCCAG TGCTGTTCAA AGTTGGAGAA GATGTGATGA 
TTGATGCAAG CTTAAGGGCT GTACAGATTC CACACGACAT TCACTTGGTG 
GACCATATTA AGTTGAAAAA ACCAGTCAGC TTTGTTCTTG TTGTTGAAAA 
ACTATCAATA TTTAACATGC TTGTCAATCT TAACTTTCAT GTCACACACA 
ATTGCATAAT CATCACTGGA TGTGGAAAAC CTGATATGGC AACAAGAGGT 
GCAGTTTTTA AACTTAATTA TTGCTTGCCA GTCAAAGTTT ATATCCTTGC 
TGATCTTGAC TTGGATGGGC TCCAGATATA CTTATAAACT TGGCAGCAAA 
GTAAGGGCTT TTGAGAACTT TGTGTTGCAT CTAGAGATCT TATATGGCTG 
GGTGCTAGAC CAGAAGATTC TCTACTTTTA CAAGAACCCA ATGAATTTAC 
CAGAGTGCAG CAGAAATCTC TTACTGATCT TCGTGATTCT CTTCCCAATA 
TTTCGGACAG AGATCGTCTA AACACTGTGT TGGACTGGAA CTTTACATTG 
AATCTGCATG ACATTCTTGA TTATGAGAAT ATTGTAGAGT ATTTGACTAA 
TCGAATGGCA GAGTTTGAAG ATCCTTGATG GAGAAAGATC TGACCTCAGC 
TGTTTGCCCA TAAGTGAAGC TGAAGATGGG TTGCCAAACG TGTGTCGCCA 
TTTATGCCAC TTGTATATTT TGCACGATTG CATCTTGTTT ACTGCAATAG 
GCGATACTGT GCCAGTGTGC CACCATCTGG ATGATATCCC CTACTGACTG 
TAGTTCTCAT TCTGGGTAAT TCTAATTCTG GTTTTTAAGA GTATGCTGTA 
ACGTAGGAGC AATACCTCTT TGCTGATAAG AGTTTAACAG ATCAGGCAAT 
TTCTGATTAA CTTAAAGACT ACGTGTTTTG ATTAACCGTC GCTTAAAAAG 
TGTGTTAGTA TGACATTTAC TTTTGTTTGT CTTTGAACTG TGCTGAATCC 
TGGGAAGTCC GATGGGTGCC ACAGCTGTGA TATGGTCAAA GATGAGATCT 
CCGGGCGGTG GTTTCGCGGA TTGTAGATTT GTAGCACAGG GAGTATTGCT 
GATTGTAATG CAAACTTTTG GTCATATTTA CGTACTTTGC TTGGTGAGAT 
TGACATTACT TACATGGTGT GTTTATTTCA CGCT

Gene models with high sequence identity

AT4G31670.1 [+] show detail - ubiquitin-specific protease 18
E-value: 9e-21; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Spo11/DNA topoisomerase VI, subunit A	1.2e-13
FPrintScan	Spo11/DNA topoisomerase VI, subunit A	1.2e-13
FPrintScan	Spo11/DNA topoisomerase VI, subunit A	1.2e-13
FPrintScan	Spo11/DNA topoisomerase VI, subunit A	1.2e-13
HMMPfam	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	8.5e-23
superfamily	Spo11/DNA topoisomerase VI, subunit A	3.8e-39
superfamily	Cysteine proteinases	9e-37
PatternScan	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	0
HMMPanther	Spo11/DNA topoisomerase VI, subunit A	1.2e-20
Gene3D	no description	1e-25
ProfileScan	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	14.922

See the detailed result >

AT4G31670.1

Model type: Protein coding
Short Description: ubiquitin-specific protease 18
Computational Description: ubiquitin-specific protease 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.1); Has 9064 Blast hits to 8065 proteins in 324 species: Archae - 2; Bacteria - 451; Metazoa - 4433; Fungi - 1481; Plants - 999; Viruses - 9; Other Eukaryotes - 1689 (source: NCBI BLink).
Link: InterPro Scan - TAIR