K15506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15506

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15506

Determination of introduced cDNA(s)

  • J033150E08 - Rice Full-length cDNAs - Original: J033150E08

    full reading [+] show sequence

    Nucleotide sequence: J033150E08 - full reading 
    GTCCTTGTAA TTCCTAAATC CGTCTCTTCT TCCGCCGGCG CCGGCGAGGC 
    AAACCAGTCC AAAACCCTAA CAGCCCCGCT CTATTCGTTT GCCAAGATGA 
    GGTCAATCCG AGCGGCGCAA GCTCTGGCCT CCCGCTCGCT GCTCCTCTCC 
    TCGCGCGCTC TCCATGGGGA CGCCGCCTCC ACGGCGGCGG CCGCGGCGGG 
    CGGCGGGAGA TTGGGCGTCC AGCCGTCGCC CCCATCCCAG GCATCATCAT 
    CATCATCCTC GCGGGCCATG CCAGCTGGAA TCGCTGGGGC GGTCTCCTTC 
    TCCCTGACCT TCGCGACGAT GGCGGCGGCG GAGGCCAAGG AAAGGCCGCC 
    CATGGATCTG CTGCCGCAGA ACGTGGTGCT GTACCAGTAC CAGGCCTGCC 
    CCTTCTGCAA CAAAGTCAGA GCCTTCCTAG ACTATCATGA TATACCCTAC 
    AAGGTTGTGG AAGTTAATCC ATTGAGCAAG AAGGAAATCA AGTGGTCTGA 
    GTACAAGAAG GTCCCAATAC TGATGGTAGA TGGTGAACAG CTGGTTGATT 
    CATCAGATAT AATCAATATA TTACAGCAAA GGGTCCGCCC TGATGATAAA 
    GCCACTAATG AAGAGGAAGA AAAATGGCGC AGGTGGGTTG ATGAGCACCT 
    TGTGCATGTC TTGTCGCCAA ATATATATCG GACAACTTCA GAGGCCTTGG 
    AATCTTTTGA TTATATTTCA AAACATGGCA ACTTCAGTTT TACTGAGCGG 
    TTTGCTGTGA AGTATGCTGG TGCTGCAGCA ATGTACATGG TGTCTAAGAA 
    GCTAAAGAAG AAGTACAATA TAACTGATGC GCGTGCTTCA TTATACGATG 
    CTGCCAACAC ATGGATGGAA GCCCTTGATG GAAGGGATTT TCTAGGTGGC 
    TCCAAGCCTA ACTTGGCAGA TCTTGCAGTA TTTGGTGTTT TGAGACCTAT 
    CCGATACTTG ACAGCTGGAA AAGATATGGT TGAGCATACA CAAATTGGTG 
    ACTGGTACCA ACGTATGGAA GATGCAATTG GAGAACCATC AAGAATCCAG 
    GAGTAGAACG AAATTAGTAG AATTTCTTTT TGCCTCTTCA AGTCTTTGAC 
    CATTTCAAAC GGAAGGAAGT ATATGCTTTA GACATTGAAA TTATTGAAGT 
    TTTGCAGAAT GTGTGACAAT GTAATAATGT GACATCATAT ATTTAGTACA 
    CAGAGAATTG AACATGAAAA AGAAGGAACT CGAACTTCCT GTTTTGGTTT 
    TAAATCATTG TACGGCTGTT TGTATCTAAC TTTTCCAAGT CGCGACGTCA 
    TTATTTCGTT CCTGGTTTAG GAGTATATGA GAAATTTTTG GGGGGGTCAG 
    TCGTGAAGTA TTAACTTGTG ATCGTGTTGA TGGATAAACT GCAAGATTTA 
    CATTCTCCAT CGATATTTTG TGATGTTCTA ATACAGCTTG ATTGTGCTTT

    Gene models with high sequence identity

    1. AT5G42150.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 4e-103; Score: 372.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glutaredoxin active site 0
    Gene3D Thioredoxin fold 2.9e-12
    HMMPfam Glutaredoxin 3.7e-11
    HMMPfam Glutathione S-transferase, C-terminal 5.2e-05
    HMMPanther MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1.6e-72
    ProfileScan Glutaredoxin 14.642
    superfamily Thioredoxin-like fold 8.4e-17
    superfamily Glutathione S-transferase, C-terminal-like 7.6e-13

    See the detailed result >

    AT5G42150.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    Glutathione S-transferase family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR