K15511

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15511

Determination of introduced cDNA(s)

J033126F02 - Rice Full-length cDNAs - Original: J033126F02

full reading [+] show sequence

GGATCGCGTA AAAGAAAAAG AAATCTCCCC GTCTCGTTCT CGTTGTCTCC 
TCCGCTCCTT GCGCCGCCGC CAAGACGAGT CGCGTCGCGG CTGAACAGGG 
GAGGGCCGGG CGGCGATCTC CATCTGGCGA GCAGAGCAGC GGAGGGGAGG 
GGATCCTGAG GAAATGCAAG TTAATAAAGA GGCACCTCTG GGGTGCCTCA 
AGCCAATTTC TCAGTATAAC CTGCAAGAGC AGAGAAGCAA CGGGTTTCCT 
GAGAATAGTG AAAAAAAGAA TGATAGTATT GCAACAGAAA GAGTCTTGGA 
GGCATCTCCT CTTCCAAATC AAGGCTTTTT CAGACCCGTT CAACGGACAG 
AATATTATGC CTATCCATTT ATTTATGCTG ATTACCAAAT GCCGGGACAG 
CCACAACCTT ACAACTTAGA TAACCAATTT TATCAAATAA ACAGGGACCA 
CAGTTTTCCT ATTGAGAGTA GAGTTCAATA TCTTCCATTC AAGATGCCCC 
CTCAAGGTTA CCCTCCTGAT GCACAACTTC AGGAATTTCA ATATTTTGTG 
GTTATTGACT TTGAAGCAAC CTGTGACAAG GAGAACAATC CACATCCACA 
AGAAATCATT GAGTTTCCAT CTGTCTTGGT TAACAGTGCA ACTGGACAAC 
TTGAAGCTTC CTTCCAAACG TATGTTCGGC CGGCATATAA TCAACTTTTG 
ACTGACTTTT GCAAGGAGCT TACGGGCATT CAACAAATTC AGGTAGACAG 
AGGTGTGCCT CTAAGTGAGG CATTGCTCAT GCATGATAAG TGGTTGGAGG 
AAAAAGGGAT TAAGCACAAG AACTTCGCTG TTGTGACATG GTCTAACTGG 
GATTGCCGTG TAATGTTGGA ATCTGAGTGC AGATTAAAGA GAATCAGGAA 
GCCCCCTTAC TTTAACAGGT GGATAAACTT GAAGGTTCCT TTCCAGGAAG 
TGTTTGGGGG TGTCCGGTGC AACTTAAAAG AGGCAGTTCA GTTGTCTGGC 
CTTACATGGG AGGGCCGTGC CCACTGTGGG CTCGATGATG CTCGCAACAC 
CGCTCGCCTC CTTGCATTGC TGATGCACCG GGGCTTCAAG TTTTCGATCA 
CCAACTCGCT TGTGTGGCAA TCTGCCCCGC AGTCAATAAC GTGCCAGTCG 
TCCCCTGCGC ACTCTCCGTA TCCCAACCAA TCACACCATA AGCCAATGGA 
AGTGATGGGA TCTCCTGTGC AGGTTAACCC ATACGCCGGC ATCACAGTGA 
AGAAGCCGAT GTACTGCCAC TGCGGCGTGC TGAGCCAGAT CAAAGTTACC 
TACAGACCAG GCCCGATGCA CGGTCGATAT TTCTACGGAT GCGGAAACTG 
GACATCCACA AGGGGGGCAA ACTGTGACTA CTGGGTATGG TTGTCATGAA 
AGAAAATGAA ATCCTGCCTC CATGCGAAAT CCGAAATCCG AAGGAGGGCA 
AAGACCTGGA GCTTTTAACA AGGGAGGCTA CTAGTTTGCA GTTGGTTTGG 
CTTGCTGCGC CTCCCTCGTC GTATATATGA TATAACTTTG CTCATAAGAC 
TATTGGAAGT TTGAACTAGG TAGTGTCTAA CCTGTCAATA CTGACTTCTG 
TTGATAGAAG AGAATGGGGG GGATCAGATG CTGCTTAGGA TGCTTTATCC 
ATGAATAATC TTAAGTTTGT GGACGCTTGG TTTTAACTTA AAAGATGGGA 
CCATCGTAGG TGTGATTTGT GCGACAAGAT GTCTGAAGTT TGGGCTTGCA 
GGTTGTTTTG CTCACATTGT GCCAGTAAGA GTGATTGTTA GAACAGAGT

Gene models with high sequence identity

AT3G15140.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
E-value: 2e-19; Score: 94.70

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	6e-64
HMMSmart	Exonuclease	9.1e-23
HMMPanther	3'-5' EXONUCLEASE ERI1-RELATED	4.5e-69
HMMPfam	Exonuclease, RNase T/DNA polymerase III	7.1e-25
HMMPfam	Zinc finger, GRF-type	5.3e-06
superfamily	Polynucleotidyl transferase, ribonuclease H fold	3.3e-16

See the detailed result >

AT3G15140.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 576 Blast hits to 576 proteins in 123 species: Archae - 0; Bacteria - 44; Metazoa - 336; Fungi - 16; Plants - 80; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Link: InterPro Scan - TAIR