K15512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15512

Determination of introduced cDNA(s)

  • J033107B18 - Rice Full-length cDNAs - Original: J033107B18

    full reading [+] show sequence

    Nucleotide sequence: J033107B18 - full reading 
    AGAGAGAGCG AGGCACAGCT ACCGGCGGCG CAGCCACACA GCAGCAGCAG 
    GTGAGGAGGA GAGGAGACCC GCCGCCGCCG CCGCCATGGG TATCTCGCGT 
    GATTCCATGC ACAAGCGCCG CGCCACGGGC GGCAAGCAGA AGGCATGGCG 
    CAAGAAGCGA AAGTATGAGC TCGGAAGGCA GCCTGCCAAC ACCAAGCTGT 
    CAAGCAACAA GACAGTGAGG AGGGTGCGTG TCCGTGGAGG TAATGTGAAA 
    TGGAGGGCCC TCCGTTTGGA TACTGGCAAC TACTCATGGG GAAGTGAGGC 
    CGTGACCCGC AAGACCCGTA TCCTTGATGT GGTCTACAAT GCATCCAACA 
    ATGAGCTTGT CAGGACTCAG ACCCTTGTAA AGAGTGCTAT TGTGCAAGTT 
    GATGCTGCCC CCTTCAAGCA GTGGTACCTC ACTCACTATG GAGTGGATAT 
    TGGTAGAAAG AAGAAGGCTC CTGCAGCCAA GAAGGATGCT GAGGGGCAGG 
    ATGCTGAAGC TACCACAGAG GAAGCGAAGA AAAGCAACCA TGTTGTCAGG 
    AAGCTTGAGA AGCGCCAACA GGGACGCACA CTTGACGCCC ACATCGAAGA 
    ACAGTTTGGC AGTGGGAGGT TGCTGGCCTG CATTTCTTCC CGCCCTGGGC 
    AGTGTGGCCG AGCAGATGGC TATATCCTTG AGGGCAAAGA GCTGGAATTC 
    TACATGAAGA AGCTCCAGAG GAAGAAGGGC AAGGGTGCCT CAGCTTAGAG 
    CAAGTCTTTC TTTGTTGCTG GTTCTACACT GAAAGAACTA CCCTTTTTTG 
    TTCCCTGAGA GCTCCTATGT TATGTTTGCA GACGCATAGC TGTTTTTTTA 
    GGATTAAACA ACTTTAGCAT GATGACATGA GAATGGGTTA TGTACTCTGG 
    ATGTTATTAA GTTAAAATAT TTACTTTCTG CC

    Gene models with high sequence identity

    1. AT5G59240.1 [+] show detail - Ribosomal protein S8e family protein
      E-value: 3e-90; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S8e, conserved site 0
    HMMTigr Ribosomal protein S8e 2.9e-58
    HMMPanther 40S RIBOSOMAL PROTEIN S8 5.4e-155
    HMMPanther 40S RIBOSOMAL PROTEIN S8 5.4e-155
    HMMPfam Ribosomal protein S8e/ribosomal biogenesis NSA2= 1.2e-51
    Coil coiled-coil 0

    See the detailed result >

    AT5G59240.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S8e family protein
    Computational Description
    Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR