K15515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15515

Determination of introduced cDNA(s)

  • J033124M13 - Rice Full-length cDNAs - Original: J033124M13

    full reading [+] show sequence

    Nucleotide sequence: J033124M13 - full reading
    GACCCGCCGC CGCCGCCGTC GTCCACACGA CCTCACCGCC GCCTCCTCTC 
    CGCTCTCCGG CCGCCGGTCG CTCCGCCAAC CCGACCCTCT CCCCTTCGTG
    GTGGAGCCAA CCTTAACCAT CCTACTCCGC GCGGGGCGAA GGCGTCCGGC
    GGTTGCAGGA GCCCGATGGA CAGTGGCGGC ACTGCCAGTC CTGCCGGCGT
    CGCCGGCGAC GGCGCTGGTG GCCGGGGTTC GGTCTTCCGC GGAGATGACG
    CGCCGAAGCT GCTCGCCGCG TTGAAGGAGA TGAAAGAAGG GCTCGACCTC
    GTCACCGGCA AGGTCAAGGC GCTCACCCGC AAGGTCAAGA AGAACCAGCT
    GCCGACGGCG GATGGGATTG GGTACCTGGA GGCAAAGCAC CACCTGCTGC
    TGAGCTACTG CCAGGACATC GTCTACTATC TCCTCCGCAA GGCGAAGGGG
    CTCTCGGTGG AAGGTCACCC CGTCGTGCGG AGCCTTGTCG AGATCAGGCT
    GTTCTTGGAG AAGATTCGTC CCATAGACAA GAAGATGGAG TACCAAATCC
    AGAAGCTCAC CAACGCCGCG GATAGCGGAG CTGCCCAGGA GAAGGTGCTA
    AATGCAGAAG CAAAGAGTAA GGATCAGCCT AAGGATGATG AAGACCTACT
    GAAGTATCGG CCGAACCCTG ATATGATGGA CTCTAAGATC GATCCTGCGG
    GGCAGGACAA CGATGGCATC TATCGTCCAC CAAAATTTAT TGCTGCTACC
    ATGGATGATG AGGATAAGCG CCATAAACAA GCTTCAAGGA AAGACAAAAC
    ATTAGCGCGA ATGGCTACAG AAAGCTCTTA CTTCAAAGAG ATTATTGATG
    ACGCTGCTGA TAGACCTGAA GAGTTAAAGG AAACAGCAGG TGATGAAAGC
    AGGGAATTTA CAAGGTATAT GCGGCAGAGA GAGTTGCAAG AGAAACAAGA
    AGAGGAGCTG TTCACTCGAG CTCCGCTGAC AAAACGTGAT AAGCAGACGG
    AGAAGTGGAT GAGAAAAGAG CTTCACGGGC TACGGGGCCT AACAGATGGA
    TTCGATCTTG GAATTAACAT GTTCGTCGAT GGAGACAAGG ATAATGATGT
    CGGTTCAACC GAACGCCATT TCAAGAGCGG AGGTCGGAGA AAACACCATA
    AAGGCAAGAG GAAGAGGCAT TAGTGAACCC ACAGATGGCG TTTCACACAG
    CAATGTCACA TTCAAAACCA AAATTTTGAT CTGTGCGAAT TGAGTAGTAT
    AAATGAGTGA TTTTCTTCGG CATGAGAGCC ATGTTGGTTA GAATCAGCAG
    GTTTTGTGCA TCTATCTGTC AACTTGTTCT TCAGTACGCG GTTAAAAGAT
    ATTGATCGTC GATACTTAAG TCAATTGGTA ATCTGTCGTT ATGATTTTGT
    TTGT

    Gene models with high sequence identity

    1. AT1G07840.2 [+] show detail - Sas10/Utp3/C1D family
      E-value: 5e-73; Score: 272.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sas10/Utp3/C1D 1.3e-18
    HMMPanther SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 5.4e-71
    HMMPanther SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 5.4e-71

    See the detailed result >

    AT1G07840.2

    Model type
    Protein coding
    Short Description
    Sas10/Utp3/C1D family
    Computational Description
    Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR