K15515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15515

Determination of introduced cDNA(s)

  • J033124M13 - Rice Full-length cDNAs - Original: J033124M13

    full reading [+] show sequence

    Nucleotide sequence: J033124M13 - full reading 
    GACCCGCCGC CGCCGCCGTC GTCCACACGA CCTCACCGCC GCCTCCTCTC 
    CGCTCTCCGG CCGCCGGTCG CTCCGCCAAC CCGACCCTCT CCCCTTCGTG 
    GTGGAGCCAA CCTTAACCAT CCTACTCCGC GCGGGGCGAA GGCGTCCGGC 
    GGTTGCAGGA GCCCGATGGA CAGTGGCGGC ACTGCCAGTC CTGCCGGCGT 
    CGCCGGCGAC GGCGCTGGTG GCCGGGGTTC GGTCTTCCGC GGAGATGACG 
    CGCCGAAGCT GCTCGCCGCG TTGAAGGAGA TGAAAGAAGG GCTCGACCTC 
    GTCACCGGCA AGGTCAAGGC GCTCACCCGC AAGGTCAAGA AGAACCAGCT 
    GCCGACGGCG GATGGGATTG GGTACCTGGA GGCAAAGCAC CACCTGCTGC 
    TGAGCTACTG CCAGGACATC GTCTACTATC TCCTCCGCAA GGCGAAGGGG 
    CTCTCGGTGG AAGGTCACCC CGTCGTGCGG AGCCTTGTCG AGATCAGGCT 
    GTTCTTGGAG AAGATTCGTC CCATAGACAA GAAGATGGAG TACCAAATCC 
    AGAAGCTCAC CAACGCCGCG GATAGCGGAG CTGCCCAGGA GAAGGTGCTA 
    AATGCAGAAG CAAAGAGTAA GGATCAGCCT AAGGATGATG AAGACCTACT 
    GAAGTATCGG CCGAACCCTG ATATGATGGA CTCTAAGATC GATCCTGCGG 
    GGCAGGACAA CGATGGCATC TATCGTCCAC CAAAATTTAT TGCTGCTACC 
    ATGGATGATG AGGATAAGCG CCATAAACAA GCTTCAAGGA AAGACAAAAC 
    ATTAGCGCGA ATGGCTACAG AAAGCTCTTA CTTCAAAGAG ATTATTGATG 
    ACGCTGCTGA TAGACCTGAA GAGTTAAAGG AAACAGCAGG TGATGAAAGC 
    AGGGAATTTA CAAGGTATAT GCGGCAGAGA GAGTTGCAAG AGAAACAAGA 
    AGAGGAGCTG TTCACTCGAG CTCCGCTGAC AAAACGTGAT AAGCAGACGG 
    AGAAGTGGAT GAGAAAAGAG CTTCACGGGC TACGGGGCCT AACAGATGGA 
    TTCGATCTTG GAATTAACAT GTTCGTCGAT GGAGACAAGG ATAATGATGT 
    CGGTTCAACC GAACGCCATT TCAAGAGCGG AGGTCGGAGA AAACACCATA 
    AAGGCAAGAG GAAGAGGCAT TAGTGAACCC ACAGATGGCG TTTCACACAG 
    CAATGTCACA TTCAAAACCA AAATTTTGAT CTGTGCGAAT TGAGTAGTAT 
    AAATGAGTGA TTTTCTTCGG CATGAGAGCC ATGTTGGTTA GAATCAGCAG 
    GTTTTGTGCA TCTATCTGTC AACTTGTTCT TCAGTACGCG GTTAAAAGAT 
    ATTGATCGTC GATACTTAAG TCAATTGGTA ATCTGTCGTT ATGATTTTGT 
    TTGT

    Gene models with high sequence identity

    1. AT1G07840.2 [+] show detail - Sas10/Utp3/C1D family
      E-value: 5e-73; Score: 272.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sas10/Utp3/C1D 1.3e-18
    HMMPanther SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 5.4e-71
    HMMPanther SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 5.4e-71

    See the detailed result >

    AT1G07840.2

    Model type
    Protein coding
    Short Description
    Sas10/Utp3/C1D family
    Computational Description
    Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR