K15516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15516

Determination of introduced cDNA(s)

J023038J20 - Rice Full-length cDNAs - Original: J023038J20

full reading [+] show sequence

GGGCAGCAAC AGATCGCTCG CCTCCCCGTC TCCTCGCCCG CCGCCTTCGC 
CGATCTCCAT CCGGCGAGCA TCCCTCCCGC CGCCGTCCTG CTGCTGCTTC 
CGCCGCCGGA GGGGAGGGAT ATGTGCCTGT GAAAAATCGG AGGAAAGGGG 
GTATAAATCT TTGACCATAA TGGCTGTAGC TTCTGCCAGT GCACTGTTTT 
CCGCCAAGAA TCTTCCGCAT AAACCCTGGG AGGACCCGTC ATTCTTTAGG 
TGGAGAAAGC GGGAGGCTCA TGTGCCGTTG CGCTCACATG ACACACCTGA 
AGGAGCCCTC AAGTATTGGC ATGAACGGAG GAATGTGAAC TATCTTAATT 
CTGACTCTGC TGTTTGGAAT GATGACGCGG TTCGTGGTGC CCTGGAAAGT 
GCTGCGTTTT GGTCCAAGGG CTTGCCATAT GTCCAGACTC TAAGTGGATA 
CTGGAAGTTC CTTTTGGCTT CCTCGCCAGA ATCTGTTCCA GAGAAATTCT 
ATGATGCCTA CTTCAATGAT TCAGATTGGG AGGCTTTGCC AGTTCCCTCA 
AACTGGCAAA TGCATGGGTT TGACCGTCCA ATCTACACAA ATGTCACTTA 
TCCTTTCACC ATGAACCCGC CATTTGTGCC AAATGATAAT CCTACTGGCT 
GTTATAGGAC GGTTTTTCGC ATCCCAAAAG AGTGGAAAGG TCGAAGAATC 
TTGTTGCACT TTGAAGCTGT TGATTCAGCG TTTTTTGCTT GGGTAAACGG 
CGTTCCTGTT GGATATAGCC AGGACAGCAG GCTTCCTGCT GAGTTTGAGA 
TCACAGATTT CTGCCATCCT TGTGACTCAG AAAAGGAAAA TGTTCTTGCT 
GTTCAAGTGA TGAGGTGGAG TGACGGTTCC TATCTTGAAG ACCAGGACCA 
TTGGTGGCTA TCTGGTATTC ACAGGGATGT TCTACTAGTA TCAAAGCCAC 
AGATCTTTAT TACAGATTAT TTTTTCAAAG CAACCTTGGA TGAAGGCTTC 
CGTGTAGCTG ATATTGAGGT TGAGGTGGAA ATTGACTCAC AAAAGCAGGA 
TCGGGAGCAT GTCTCAACTT TGTCTATTGA AGCAACATTG TATGACAATT 
ATGGACCTGC TGATGTTTTA ACTTCTGATA TGTCTGCTGC TAGTGTGGCC 
AATTTGAAGT TGAAGCCAGC TTCAAGACCA AAACACTGTT ATGGTTTTCA 
TGGTTATGTT CTTGGTGGAA AAGTAGAAAA TCCAAAACTT TGGTCTAGTG 
AACATCCCAA CTTATACACT CTTGTTGTTG TCCTTAAAGA TTCCAACGGG 
AAGCTCATTG AGTGTGAATC ATGCCAAGTA GGAATCCGTA ATGTCGTCCT 
GGCACACAAG CAGATGCTTG TCAATGGATG TCCTGTTGTA ATAAGAGGTG 
TCAACAGACA TGAGCATCAT CCACGTGTTG GAAAGACAAA TTTAGAAGCT 
TGCATGATTA AGGATCTGGT TTTGATGAGA CAAAACAACA TTAATGCTGT 
TAGAAACAGC CATTATCCCC AACATCCAAG GTGGTATGAG CTGTGTGACA 
TTTTTGGACT TTATGTAATT GATGAAGCCA ACATCGAGAC GCATGGCTTT 
GATGAATCTA GCCATTTCAA ACATCCTACA CTTGAACCCT TCTGGGCAAG 
TGCTATGCTT GATCGTGTTG TTGGTATGGT GGAGAGAGAC AAGAATCATG 
CATGCATTAT AGTATGGTCC TTGGGAAATG AATCTTCGTA TGGACCAAAT 
CACTCAGCCA TGTCTGGCTG GATTCGTGGA AAGGACCCGA CAAGGCCCAT 
CCATTATGAA GGAGGTGGTT CTAGAACATC CTCCACTGAT ATTGTATGCC 
CAATGTACAT GCGTGTCTGG GATATTCTTA AGATCGCACA AGACCCTTCT 
GAAAATAGGC CCCTCATTCT TTGCGAATAT TCACATGCTA TGGGAAACAG 
TAATGGAAAT ATTGATGCAT ATTGGATGGC CATAGACAAC ACTGTTGGAC 
TCCAAGGTGG TTTTATATGG GACTGGGTCG ATCAGGGTTT ACTAAAGGAA 
GATGCTGATG GATCTAAAAA CTGGGCATAT GGTGGCGACT TTGGAGACAC 
TCCAAATGAC TTGAATTTTT GTCTTAATGG CATTGTATGG CCTGATCGGA 
CAATTCACCC AGCTGTGCAT GAAGTTAAAT ATTTATACCA GCCTATCAAA 
ATAACAATGA TGGATAACAT GCTTAAGATT GAAAACGTAC ATTTTTTTGA 
GACAACAGAA GCTTTGGACT TCAGTTGGCT ACTTCAAGGA GATGGCTGTG 
CTTTGGGCTC TGGTTCACTT AATGTCCCAT CCATAGCACC ACAGAGTACT 
CATCTGATCA ATATGAAGTC ATCACCTTGG TTTACTATTT GGAGTACTTG 
TGTCGTAAAA GAAATATTTT TGTCCATTAA CGTGAAATTG AGGTACCAAA 
CACAATGGGC CAAAGATGGC CATATCTTGG CTTCAGCACA AATTTGTTTA 
CCTCCGAAAA AAGGCTTTGT CCCTCATGCG ATAGCACTGC CCAGGAGCTC 
TTTGGTTCCG AACGTGTTGG TGATCATGTA CTCATCAGCA AAAGTAATGC 
CTGGCAAATC AAAGTAAACA GTATTTCAGG AACAATCGAT AGTTGGAAGG 
TCAACAACAT TGAGCTTATG AGCAAGGGAA TACACCCATG CTTTTGGCGA 
ACACCAACTG ACCACGACAA GGGAGGCTTC TACACCAAGC CCTATGTTTC 
AAGATGGAGA GAAGCTTCTC TCGACAACAT CTCGTTCTAC AGCAGCCAGT 
TTTCTCTGAA GGAATTGCCA GACCAAACCG TCGAGATCTC CACCATCTAC 
TACGGTCTTC CTGGGAATCA ACCAAAGCCT GATGAAACCT CTCTCTCAGA 
CGAATCCGAG TCCGTCCTCT TCCGGGTGCA GATGCGCGGC CGGATCTACG 
ACTCCGGCGA CGTGATCCTG GACTACGAGG TGAGCCCCAA GAACGACCTG 
CCTCCTCTTC CTCGCGTCGG CGTCGTGTTC AACGCCGACA AGTCCCTGAG 
CCGTGCAAAA TGGTACGGGA GGGGGCCATT CGAGTGCTAC CCGGACCGGA 
AGGCCGCCGC GCACGTCGGC GTGTACGAGA GCGGCGTCGA CGAGCTGCAC 
GTGCCGTACA TTGTCCCCGG CGAGTGCGGC GGCCGGGCTG ACGTCCGGTG 
GGTGGCGCTC CAGGACGCCG ACGGGTTCGG CCTCTTCGCG TCGGCCTACG 
GCGAGTCGCC GCCGATGCAG GTGAGCGCCA GCTACTATGG CGCCGCGGAG 
CTCGACCGCG CGACGCATAA CCACAAGCTC GTCAAGGGAG ACGACATCGA 
GGTGCATCTT GATCACAAGC ACATGGGGCT GGGAGGGGAC GACAGCTGGT 
CGCCGTGCGT GCACGAGCAG TACTTGCTGC CGCCGGCGAG ATACGCCTTC 
TCGGTGAGGC TGTGCCCGTT GCTGCCGTCG TCGTCGTGCC ATGACATCTA 
CCACTCTCAG CTACCCTGTT GATCCGTCTG AGATGGGCAA GTGAGGCAAT 
AAAGCAGAGA CGTATATATG CTCCTGTAAA CTACCGGCTG CAATGACCAG 
GTTGTTTGTC GACTGTGAAA TAAGCGAGCG AGCTTGATGC TATTCCTCAA 
TCTTGACTAC AGTGTCAATT TCTCCTATAA ATGGCAATGG GGACCCATGA 
CCCTGATACC CGATGGGTTT TTACTCTATT AGAAGCTAAT TATGTTCTAA 
CTCTTATACT TATGGGTCTA TTGATAGGCG AAAATTCTTA CCCATTGGGT 
ACGTGGGTAT GGTTATATTC TTTACCCACC CATACCCACA AACCTGTGGG 
TGAAAAATCC CGTAGATTGA GCCTAAAACT ATGAATAAGA TAAATCTCAA 
CTACTATTAA ATC

Gene models with high sequence identity

AT3G54440.2 [+] show detail - glycoside hydrolase family 2 protein
E-value: 0; Score: 999.99

InterPro Scan Digest

Program	Description	E-value
superfamily	Glycoside hydrolase-type carbohydrate-binding	1.4e-77
superfamily	Glycoside hydrolase, catalytic core	4.8e-91
superfamily	Galactose-binding domain-like	7e-67
superfamily	Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich	9.3e-25
superfamily	Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich	2.2e-20
FPrintScan	Glycoside hydrolase, family 2	6.2e-33
FPrintScan	Glycoside hydrolase, family 2	6.2e-33
FPrintScan	Glycoside hydrolase, family 2	6.2e-33
FPrintScan	Glycoside hydrolase, family 2	6.2e-33
FPrintScan	Glycoside hydrolase, family 2	6.2e-33
HMMPanther	BETA-GALACTOSIDASE	1.4e-178
HMMPanther	GLYCOSIDE HYDROLASE	1.4e-178
HMMPanther	BETA-GALACTOSIDASE	2.4e-26
HMMPanther	GLYCOSIDE HYDROLASE	2.4e-26
PatternScan	Glycoside hydrolase, family 2	0
PatternScan	Glycoside hydrolase, family 2	0
Gene3D	Glycoside hydrolase-type carbohydrate-binding, subgroup	4.6e-78
Gene3D	no description	6.1e-70
Gene3D	Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain	3.2e-23
Gene3D	Glycoside hydrolase, subgroup, catalytic core	2.3e-93
Gene3D	Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain	0.00000000002
HMMPfam	Glycoside hydrolase, family 42, domain 5	1.8e-64
HMMPfam	Glycoside hydrolase family 2, TIM barrel	8.1e-102
HMMPfam	Glycoside hydrolase family 2, carbohydrate-binding	2.3e-51
HMMPfam	Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich	3.2e-16

See the detailed result >

AT3G54440.2

Model type: Protein coding
Short Description: glycoside hydrolase family 2 protein
Computational Description: glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Galactose-binding domain-like (InterPro:IPR008979); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR