K15519

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15519

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15519

Determination of introduced cDNA(s)

  • J033070C18 - Rice Full-length cDNAs - Original: J033070C18

    full reading [+] show sequence

    Nucleotide sequence: J033070C18 - full reading 
    GAGTAGACCA CCGGCATTTA CACCCCGCAA CACCCCCCCT CATCTCGCCG 
    AACCCACGTC TTTTAATAAC AAAGCAGCTT GCCACCGTCC CTGCCTCTCC 
    TGCTTTGCTT TGCCTTCTCG GAGAAGACAA ATCTACTGTA GCTGCTTGTC 
    TCTGTTCGCC GGTGGCGACC GTGAGAGGAG GAGGTAGTCC TAGTCCTAGT 
    AGGCGAGATG AGCGGCGCCA CCAAGTTCAT CAAGTGCGTC ACCGTCGGCG 
    ACGGCGCCGT CGGCAAGACC TGCATGCTCA TCTGCTACAC CAGCAACAAG 
    TTCCCCACCG ATTACATCCC CACCGTGTTC GACAACTTCA GTGCTAATGT 
    TTCAGTGGAT GGGAACATCG TCAACTTGGG ATTATGGGAC ACTGCTGGAC 
    AAGAGGATTA CAGCAGGCTG AGGCCACTGA GCTACAGGGG AGCGGATATA 
    TTTGTGCTGG CATTCTCACT GATCAGCAGA GCAAGCTATG AGAATGTTCT 
    CAAGAAGTGG ATGCCGGAGC TTCGCCGGTT CGCACCGAAT GTTCCAATTG 
    TTCTTGTTGG GACCAAGTTA GATCTACGTG ACCACAGATC TTACCTTGCG 
    GACCATCCTG CTGCTTCCGC AATTGCGACT GCACAGGGTG AAGAACTTAG 
    AAAGCAGATA GGCGCCGCGG CTTACATCGA ATGCAGTTCG AAAACACAAC 
    AGAACATCAA GGCCGTGTTT GATACTGCCA TCAAGGTGGT CCTTCAGCCT 
    CCTCGGAGAA GGGGGGAGAC GACGATGGCA AGGAAGAAGA CAAGGCGAAG 
    CACCGGCTGC TCGTTAAAGA ACTTGATGTG TGGCAGTGCA TGTGTTGTTT 
    AGGACCTGTC TGAATTCTTG AAGGTGTGTA AGCGTTGTGT AATGGCAAGT 
    GAGTTTGCTG ACTGTTCTGC TGCTTCCATT TACTACTACT AAGCTCTTTC 
    GTGTGTTTGA ATTACTACAT CTAGAACTAG AGCATCAGGC TCATAGACTG 
    ACTTCATATC AGGTGTTTGT ATCATTAATA TTATTATGTA GGAAGGTTGT 
    GGTTTGTGGA ACAACTAAAT ACAACAATGC AGGCTATGTT GTAGTATGCT 
    CTGCTACTGG TGTATGTTAT AAATATAAAA TTCTGCTACA TACTTTTGT

    Gene models with high sequence identity

    1. AT4G28950.1 [+] show detail - RHO-related protein from plants 9
      E-value: 2e-96; Score: 349.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Small GTPase, Rho type 24.64
    HMMSmart Ras small GTPase, Ras type 1.6e-20
    HMMSmart Ras small GTPase, Rab type 3.9e-23
    HMMSmart Small GTPase, Rho type 6.2e-107
    HMMSmart Ran GTPase 0.0016
    HMMPfam Ras 3.7e-52
    Gene3D no description 2.9e-56
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-54
    HMMPanther GTPASE PROTEIN ROP 8.3e-145
    HMMPanther RAS-RELATED GTPASE 8.3e-145
    FPrintScan Ras GTPase 3.7e-37
    FPrintScan Ras GTPase 3.7e-37
    FPrintScan Ras GTPase 3.7e-37
    FPrintScan Ras GTPase 3.7e-37
    FPrintScan Ras GTPase 3.7e-37
    HMMTigr Small GTP-binding protein 9.8e-31

    See the detailed result >

    AT4G28950.1

    Model type
    Protein coding
    Short Description
    RHO-related protein from plants 9
    Curator Summary
    A member of ROP GTPase gene family.
    Computational Description
    RHO-related protein from plants 9 (ROP9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24641 Blast hits to 24616 proteins in 674 species: Archae - 9; Bacteria - 56; Metazoa - 12738; Fungi - 3855; Plants - 2680; Viruses - 20; Other Eukaryotes - 5283 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR