K15526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15526

Determination of introduced cDNA(s)

J033115I02 - Rice Full-length cDNAs - Original: J033115I02

full reading [+] show sequence

GACTCCGATC CACCGCCGAT CGCCTCCCCA AGCAAGCAAG CAGCCGCTCG 
GAGCGAAGAC TGAGGCGGCG GCGACCATGG CGGGGCTCGC GCACCTCGTC 
CTCGCCCTCC TCCTCCCCCT CGCGCTGCTC CCGCCGGCCG CGCGCGGCAC 
GGAGGAGACG CCGCAGTACA CGACGGTGCA CGCCGAGTCC GACTTCGAGG 
TGCGCCGCTA CCGCGACACC GTCTGGATGT CCGCCCCCTC CGACGACATC 
TCCTTCCACG TCGCCACCAA GCTCGGCTTC CACCGATTGT TCCAGTACCT 
GATGGGCGCG AACCTTAACT CCTCCAGGAT CAGGATGACA ACTCCCATCC 
TAACTAGCAT CGTCCCAGGT GCAGGGCCGC TACACTCGTC TGCCTACTTT 
GTGCGGCTCT ACTTACCAGC GAAGTTCCAG GCTTCCCCTC CTGTGCCTCT 
CCCCGAACTG AACCTCCACC CGGATAGGTG GCCAAGCCAC TGCATTGCAG 
TGAGGAGCTT CTCGGGTTAT GCACGGGACA ACAATGTCGT CGAGGAAGCG 
GAGAAACTTG CGTTGAGTTT GAGCCGGTCA CCATGGGCTA ATTCCACAAA 
CTACCCTAGC AAGAGCGCCT ACTCAATTGC GCAGTATAAC AACCCCTTTC 
GCATCATTGG CCGTCTCAAC GAGGTATGGT TCGATGTTGA TTGCAAGTCT 
ACTGGTGTTG AGGCATACTA AAACGAAGGT TTTACTGTGC ACCATCACCC 
CAAAAAAAAA AAAGGCTTAT TGTGTGTTAG TACCACATAA GCCATGTACA 
TCTTTGTATA TATGTGTTCA TGGTGATGAA TTCTGATGAT AAAGCTGGGG 
GGTGTTTGTG GTGTGTCAAT CCATCAGTGA TGAAATGACA CAGCAGATGT 
CAATTGTAAT GATCCACTAT GTACTCACAT CTTGCAAGCT CGAGTGCTCG 
ATTCAGACTG ATCTTGCATG TCATTGTGTG GCTAATGTGA TGTTTCCACT

Gene models with high sequence identity

AT1G17100.1 [+] show detail - SOUL heme-binding family protein
E-value: 4e-36; Score: 149.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	SOUL haem-binding protein	1.6e-48
HMMPanther	HEME-BINDING PROTEIN-RELATED	1e-43
HMMPanther	SOUL haem-binding protein	1e-43

See the detailed result >

AT1G17100.1

Model type: Protein coding
Short Description: SOUL heme-binding family protein
Computational Description: SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1); Has 1318 Blast hits to 1294 proteins in 131 species: Archae - 15; Bacteria - 114; Metazoa - 250; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).
Link: InterPro Scan - TAIR