K15527

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15527

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15527

Determination of introduced cDNA(s)

  • J023139I05 - Rice Full-length cDNAs - Original: J023139I05

    full reading [+] show sequence

    Nucleotide sequence: J023139I05 - full reading 
    GGCAGGCCGA ACGCCCGCGC CGTGTCTGCT TATGATGCTT CGTTCTCTCC 
    GCGCTCCGTG TCCGACCTTC TTCAGACTTC ACACCTCGCG CGCCGCCGCA 
    GCTCCGATCG GAAGACGCTC GATTCGTCTC CGACTCCGAC GACCAGAAGC 
    TACCGGCGAC GCGAGCGGAG AAGCGCGGAG GGGAGGGGGC GCGCGCCGCC 
    ATGGCGTTCG AGAAGATCGT CGTGGCCAAC CCCGTCGTCG AGATGGACGG 
    TGATGAGATG ACTCGAGTTA TTTGGAAATG GATCAAAGAT AAGCTTATAT 
    TCCCTTTCTT GGACTTGGAC ATAAAATACT ATGACTTAGG TCTACCTAAT 
    CGTGACGCTA CTGGGGACAA AGTTACAATA GAGAGTGCAG AAGCGACCCT 
    AAAGTATAAT GTAGCCATCA AATGTGCAAC TATAACTCCA GATGAAGGAC 
    GCGTGAAAGA GTTTAATTTA AGTGCAATGT GGAAGAGTCC AAATGGGACA 
    ATAAGGAACA TTTTGAATGG AACTGTTTTC CGAGAACCAA TCATCTGCAA 
    GAATATTCCT CGGCTTGTAC CTGGGTGGAT AAAGCCCATA TGCATTGGAC 
    GACATGCATT TGGTGATCAA TACCGAGCAA CAGATACAGT TATTAAAGGT 
    CCTGGGAAGT TGAAGTTAGT ATTTGATGGC AGAGAGGAAC AAATAGAGTT 
    GGATGTGTTC AACTTTACTG GTGCTGGTGG AGTAGCCTTG TCTATGTATA 
    ATACTGACGA GTCTATTTGG GCATTCGCTG AAGCTTCCAT GAACATGGCT 
    TACCAGAAAA GATGGCCACT TTATCTTAGC ACCAAAAACA CGATCCTCAA 
    AAAATACGAT GGAAGGTTTA AAGATATATT TCAGGAGAAC TATGAAACAA 
    AATGGAGAGC CAAGTTTGAT GATGCAGGAA TATGGTACGA ACATCGGCTG 
    ATTGATGATA TGGTGGCCTA TGCCCTTAAG AGTGAAGGTG GCTATGTTTG 
    GGCTTGCAAG AACTATGATG GAGATGTGCA GAGCGATCTA ATTGCTCAAG 
    GTTTTGGATC GCTAGGTCTA ATGACATCAG TTCTGGTGTG CCCTGATGGT 
    AGAACCATTG AAGCTGAAGC TGCTCATGGT ACAGTCACAC GCCATTACAG 
    AGTTCACCAA AAAGGAGGCG AAACTAGTAC AAATAGCATT GCTTCAATAT 
    TTGCTTGGAC AACCGGACTA GGACATAGGG CAAAGCTCGA TGACAATAAA 
    AGACTGTTAG ATTTTGTACA AAAACTTGAA GCTGCTTGTG TGGGAACAGT 
    GGAATCTGGA AAGATGACAA AGGATCTAGC TCTTCTTGTA CATGGGCCAA 
    ATGTTAGCCG AGATAAGTAT CTTAACACTG TTGAGTTCAT CGATGCTGTT 
    GCTGAGGATT TAAGAACAAG ATTGTCAGTA ACATCCAAGT TATGAAGGAA 
    TGAATAGGGC AACGGCAGGG GACATGTTAG GATCCCATGA TACAAAGTTT 
    ATACATTTTT ACTTTGAATA AGAGCGATTG AAGCATTGGT ATGCGCAGCT 
    ATCAACCACG GTGCTCTGAT AAAATCTGGT AAAGATTGTA TGCATACTCC 
    ATACAACAAT GGAGGTGGAG GAGGATATTT TGCTCGAAAT AAGAAGTTTG 
    AACTTTTATT CGTCAGACTT CTACTTATAA CTACTTTGAT GATTAAATCA 
    TGGCCGTGTA GCTTAGTTCT TCTATGCCAA AAGAGCAAGT AGAACTATCC 
    TAAAGGTACC CACCACAAGT GGTGTTTGTG CTTTGTACCA TACAAACAAG 
    ACTGTTTATT TACTACGGTA TATAGCTTGG AATAAAAAAG CAGGTGCAGA 
    TCTGTTGGT

    Gene models with high sequence identity

    1. AT1G65930.1 [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
      E-value: 0; Score: 707.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Isocitrate/Isopropylmalate dehydrogenase-like 5.7e-152
    HMMPfam Isocitrate/isopropylmalate dehydrogenase 7.7e-85
    HMMPIR Isocitrate dehydrogenase NADP-dependent, eukaryotic 5.8e-280
    HMMPanther Isocitrate dehydrogenase NADP-dependent, eukaryotic 0
    PatternScan Isocitrate/isopropylmalate dehydrogenase, conserved site 0
    HMMTigr Isocitrate dehydrogenase NADP-dependent, eukaryotic 2.8e-236
    Gene3D Isocitrate/isopropylmalate dehydrogenase 3.7e-143

    See the detailed result >

    AT1G65930.1

    Model type
    Protein coding
    Short Description
    cytosolic NADP+-dependent isocitrate dehydrogenase
    Curator Summary
    Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.
    Computational Description
    cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR