K15541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15541

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K15541

Determination of introduced cDNA(s)

  • J013163I06 - Rice Full-length cDNAs - Original: J013163I06

    full reading [+] show sequence

    Nucleotide sequence: J013163I06 - full reading 
    TGGCCGTACA CCATTTCGTT CCGACGCGAG TAATTCCTCC CCACGGGCGG 
    CGACTAGGGC GGCTAGGGTT CGTCGGGCGC CGCCGTGCCG GAGATCGCCT 
    CTCGCCGCCG ACACCCGGAT CTCCGCCGCC GCCGGTCGCC CCAGGTTATC 
    CCGCTCCCGC AGTCACCATC CCGTCTTCTC CGCCAGTCGC CTCACGCCCG 
    GCCTGGACGC CCCGGAATCC ATTGTCGGTC TCGCCCCGCC GACTGCCGTT 
    GACGCCACTG GCTGAAGGTG TGAATATGTC GGACAGTGCG TTGAAAGATC 
    TGAATCTAGC TCAGTCAGCA GAGCTGGAGA AAACCAAGGA CAGTTCTGCC 
    AAGTCTTGCA TCACCAAGCC TGTCTTGAAT GGCAACAAAT GCAACAATAC 
    GGAAGAAAAT GCTCCACCTG TACTCCCTGA TGCTGTGACT AATGGGTGTG 
    AAGCTGGAAA TGCAGATGTT GAGTATATTG ATTCTGAGAG TCTGACAGAT 
    CTTGAAGATG CTGGTGCAAC CCTTAGTACT TTAGTTGCAA GGTTGGATTC 
    AAAAGACTGG GTTATGACAT GTGAAGCTCT AAATAATGTT CGTCAGTTGG 
    CAATATTTCA CAAGGATAGA TTGCAGGAAC TTCTAGAGCC TCTAGTTCCT 
    CTTATTGTGA AATCTGTCAA GAATCCAAGG AGTGCTGTCT GTAAAACCGC 
    ACTCATGACC TGCGCTGATA TTTTCAAGGC ATACGGTGAC CTAATGGTTG 
    ACTCAATTGA TCCACTGTTA GTGCAGCTAT TTCTGAAATC TTCACAAGAT 
    AAGCGTTTTG TCTGTGAAGC TGCTGAGGCA GCCCTCATAT CGATGACAAG 
    CTGGATCGCC CCTTCTGCTC TGTTACCAAA AATGCAACCT TACCTTAAGA 
    ACAGGAATCC ACGAATTCGA GCAAAAGCAT CAATGTGCTT CAGCAAGAGC 
    GTCCCACGCT TGGGTGTGGA GGGAATTAAA GAATATGGAA TGGATAAGCT 
    TGTTCAGATC GCAGCAACTC AGCTTAGTGA CCAGCTTCCT GAATCCAGGG 
    AGGCTGCTCG CAAGCTGGCT TTGGAGCTAC AAGCATTCTA TGAGAAATCC 
    CAAGCTTCGA GTTCTGGTGA AGTTGACGAC GCACCTGCTA CCTCACCTGA 
    TGCTGATGCT GATGCTGGTG CTGAATCATG GGAAGCTTTC TGCCAATCAA 
    AGCTTTCCCC ATTAAGTGCA CAGGCAATCC TTCGTGTCAC CTCTACGACG 
    AAAGAGGGTG TGGCTGTGGG TGTCACCTCT ACCCCTCCGA AAGAAGGCGT 
    CACTGTTGGT TGCTAGCATC AGGAGGTAGT AGATGCAATG AGGTTGTGGT 
    TTTTCCATCC GATTCACCTT TTGCTGTACA TGGTTATGGT TGTTCTTTCT 
    CTACATCCAA TCTGGGATTC GTTCGTTAAG CATCGGTTCG AGAGTTGAGG 
    TGTGACCTGT GGGTGTTAAT ATTGGTGCGA GATATACCTG TTATAGTTGA 
    CTGTATGATC TTCCTTTTCT CCCACTGCTT GGTATTGATT GGTCAGGCGA 
    ATTGTAGAAT TTCTTCCACT ATTCAATATT ACTACACAGT AATTTTTCCA 
    TCTCGTGGCC TTGTGTTTAT TTGCTGGTGT TCACTATTTC GTGTTTTTGA 
    ATTCTAACTT CTTCCATTAT TCAATATTAT CGAATCAATT CTCATC

    Gene models with high sequence identity

    1. AT5G14790.1 [+] show detail - ARM repeat superfamily protein
      E-value: 4e-92; Score: 335.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 4.1e-18
    HMMPfam CLASP_N 4e-08
    HMMPanther CLASP 1.4e-44

    See the detailed result >

    AT5G14790.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01450.1); Has 322 Blast hits to 322 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 10; Plants - 125; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR