K15544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15544

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15544

Determination of introduced cDNA(s)

  • J023091J19 - Rice Full-length cDNAs - Original: J023091J19

    full reading [+] show sequence

    Nucleotide sequence: J023091J19 - full reading
    GAATTTGGGC CTTCTCCTCC CTCCTCCTCC TCCTCCTCCT CCTCCAACTC 
    CCTCGAGATT TCTCATGGCG GCGGCGGCGG CCTCCTCCTC CTCCTCGTCG
    GCGGCGGCGA CGCCGCAGGG GGTGACGGAG CGGCGGGGCA TCCCGGCGGC
    GTCCTTCGTC GAGGACGTCG AGACCTACCT CCGCCAGGCC GGGCTCGACG
    TCAACTCCGG CCTCGCCTTC CTCCAGGAAA GGCTGCAGCA GTACAAAATA
    GTGGAGATGA AACTTCTAGC ACAACAGAGA GATCTTCAGG CAAAAATTCC
    TGATATAGAG AAGTGCTTGG ATATTGTTGC AACTTTACAA GCTAAAAAAG
    CTTTGGGTGA GGCACTCACA GCCGATTTTG AATTATCTGA GGGAATCTAC
    TCCCGTGCGA AAATCGAGGA CACCGATTCT GTGTGCCTAT GGTTGGGTGC
    AAATGTAATG CTGGAGTACT CCTGCGACGA GGCCAACGCC CTCTTGAAAA
    AGAATCTGGA AAACGCCAAG GCCAGTTTAG AAGTCCTTGT TGCTGATCTC
    CAGTTCTTGC GGGACCAACA AACGATCACT CAGGTTACAA TTGCTCGGGT
    GTTCAACTGG GACGTGCACC AACGGAGAAG CAAGCAAGCT ATCAAAGAAA
    CCTGATCATC ATACCCGCAG ATTCTACCAG CCAAAATGAG ATCGCGACAT
    TTTTGTACTT CTTGCCACCT CTGGCAGTCT AGGCCATCGT AGCATGTGCC
    CTCTGTTGGC GCCTTGCCGT GTAACAGTGT ATCAGGTTTT ATGGTGTTGG
    ATTGTTGGAA CTCTGTTTGC CTTGCAAGTA GAAATTGGTG TTTGTTTTCA
    CTTCGGTTCG CGTGATGGAA CATATTTTGA GGAGTAAAAA TCTTAGCGGT
    TTTCAG

    Gene models with high sequence identity

    1. AT5G49510.2 [+] show detail - prefoldin 3
      E-value: 8e-80; Score: 293.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Prefoldin alpha-like 1.1e-30
    HMMPanther PREFOLDIN SUBUNIT 3 1.4e-73
    Coil coiled-coil 0
    HMMPIR Prefoldin, subunit 3 7.9e-91
    superfamily Prefoldin 7.5e-19

    See the detailed result >

    AT5G49510.2

    Model type
    Protein coding
    Short Description
    prefoldin 3
    Computational Description
    prefoldin 3 (PFD3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin, subunit 3 (InterPro:IPR016655); Has 406 Blast hits to 406 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 133; Plants - 37; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR