K15544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15544

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15544

Determination of introduced cDNA(s)

  • J023091J19 - Rice Full-length cDNAs - Original: J023091J19

    full reading [+] show sequence

    Nucleotide sequence: J023091J19 - full reading 
    GAATTTGGGC CTTCTCCTCC CTCCTCCTCC TCCTCCTCCT CCTCCAACTC 
    CCTCGAGATT TCTCATGGCG GCGGCGGCGG CCTCCTCCTC CTCCTCGTCG 
    GCGGCGGCGA CGCCGCAGGG GGTGACGGAG CGGCGGGGCA TCCCGGCGGC 
    GTCCTTCGTC GAGGACGTCG AGACCTACCT CCGCCAGGCC GGGCTCGACG 
    TCAACTCCGG CCTCGCCTTC CTCCAGGAAA GGCTGCAGCA GTACAAAATA 
    GTGGAGATGA AACTTCTAGC ACAACAGAGA GATCTTCAGG CAAAAATTCC 
    TGATATAGAG AAGTGCTTGG ATATTGTTGC AACTTTACAA GCTAAAAAAG 
    CTTTGGGTGA GGCACTCACA GCCGATTTTG AATTATCTGA GGGAATCTAC 
    TCCCGTGCGA AAATCGAGGA CACCGATTCT GTGTGCCTAT GGTTGGGTGC 
    AAATGTAATG CTGGAGTACT CCTGCGACGA GGCCAACGCC CTCTTGAAAA 
    AGAATCTGGA AAACGCCAAG GCCAGTTTAG AAGTCCTTGT TGCTGATCTC 
    CAGTTCTTGC GGGACCAACA AACGATCACT CAGGTTACAA TTGCTCGGGT 
    GTTCAACTGG GACGTGCACC AACGGAGAAG CAAGCAAGCT ATCAAAGAAA 
    CCTGATCATC ATACCCGCAG ATTCTACCAG CCAAAATGAG ATCGCGACAT 
    TTTTGTACTT CTTGCCACCT CTGGCAGTCT AGGCCATCGT AGCATGTGCC 
    CTCTGTTGGC GCCTTGCCGT GTAACAGTGT ATCAGGTTTT ATGGTGTTGG 
    ATTGTTGGAA CTCTGTTTGC CTTGCAAGTA GAAATTGGTG TTTGTTTTCA 
    CTTCGGTTCG CGTGATGGAA CATATTTTGA GGAGTAAAAA TCTTAGCGGT 
    TTTCAG

    Gene models with high sequence identity

    1. AT5G49510.2 [+] show detail - prefoldin 3
      E-value: 8e-80; Score: 293.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Prefoldin alpha-like 1.1e-30
    HMMPanther PREFOLDIN SUBUNIT 3 1.4e-73
    Coil coiled-coil 0
    HMMPIR Prefoldin, subunit 3 7.9e-91
    superfamily Prefoldin 7.5e-19

    See the detailed result >

    AT5G49510.2

    Model type
    Protein coding
    Short Description
    prefoldin 3
    Computational Description
    prefoldin 3 (PFD3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin, subunit 3 (InterPro:IPR016655); Has 406 Blast hits to 406 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 133; Plants - 37; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR