K15551

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short) increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15551

Determination of introduced cDNA(s)

J023110G05 - Rice Full-length cDNAs - Original: J023110G05

full reading [+] show sequence

GGTAGGCCCG TCCTCTCCTC CCGAAGCCAC CACCGGCCCA CCGTCCATCC 
ACGCCGCCGC ACCACGTGCC CCCACGCCCC CGACGCGCAA ATCACCGCGT 
GATCCGATCC CCCCTTCTTC CCAAAGTCCA AGCCTCACTC TCTCCCTCTC 
CATCCCACGC CTCGCTCACT AGCGCACAGA TCTCCTACCA CCACCACCAC 
CGCCGCAGCC ATGGCGACCG GGTACTACCG CGGCGGCGGC GGCGCCAGGG 
ACCACGCCGA CGAGCCCGAC GACTTCGACG AGTACGACCC CACGCCGTAC 
GGCGGCGGCT ACGACCTCTT CATCACCTTC GGCCGCCCGC TCCCGCCCTC 
CGACGAGACC TGCTACCCTT GCTCCGCTCC CTCCACCTCC TACGACGCCC 
CGCACTACTC CGCCGACGAG CCCTCCCCCT ACGCCCACCA CTCCAAGCCG 
CAGCCCGCCT ACGGCTTCCG CCCCCAGCAC GAGCAGCAGC AGCAGCCGTC 
CTACGCCTCC TCCGGCTACC GCCCCCAGCA CGAGCAGCAG CAATCCTACG 
GCTCCTCTGG CTACGGATCT AAGCCCCAGC CCGCCTATGG CTTCCGCCCC 
CAGGCCGAGG AGGAGAACAC CTACGGCTCC GGCTATGGAT CTGGGTACGG 
TGGTGGAGGA AGGAAGCAGC AGGAAGAGGA GAGCTACGGC TCCGGCTACG 
GTCGCAAGCC GCAGGTCGAG GAGAGCTATG GATCAGGGTA TGGGACCAAG 
CCGCAGCAGG AGGAGAGCTA TGGATCAGGG TATGGATCTG GGTATGGGAC 
CAAGCCGCAG CAGGAGGAGA GCTACGGCTC CGGCTATGGG AGGAAGCCGC 
AGCAGGAGGA GAGCTACGGA TCGGAGTATG GTTCCGGCTA TGGGAGGAAG 
CCGCAGGCCG AGAGCTATGG ATCGGGGTAT GGGAGCAGGC CACAGCAGGG 
TGGGGAGGAG TATGGTAGCG GTGGGTATGG GAGGAAGGCT CAGGAGGAGA 
GCTATGGTTC CGCGGGCTAT GGCGGCAGGA AGACCGAGGA AGAGAGCTAT 
GGTGGTGGTT CTGGTTATGG ATATGGGAAG AAAGCCCAGG AAGAGAGTGA 
AGGGACCTAT GGCTCTGGTG GTTACCCCAA GCCGAAGCCT TACAGTCAGG 
AGGAGACGCA GGGTTCTTAT GGGTATGGGT ACGGCGAGAA GCCTGCGTAT 
GAGAGTGGTG GATACAACAA GCCGAGCTAT GGCGGGGGAG ACGAATACCA 
GGGAGGCTAC GGCCGCAAGA AACATGATGA CAATGACTCT GATGATGAAA 
AGAAGCAGCG TTATCAGAAG CACCACCACC ATCGCCGCCA GGAGTACGAT 
GATTAAGCTT CCGGTGCGTT ATCTTCTACG GGGCCATCGA TTGCTGCTAT 
CACTTGCCAG CCATAGTACT CTGCGTGAAT AAAAGATGCT CCTGCTCAGT 
CGTTTCATCG TTCGTCTCAT GGACACTATT TGTTATCCGT CTCCATGATA 
GTATGATGTC GCTTCAACAC TGATAATAAA TTGTGGCTTT GCGCGTGTTT 
TTTTATGTTT GAAGCATGTC TAAACAATCA CTCTGTCAGT TATCATTTCT 
TTGCTTGGGA TGATTGGTGT ATATATGTGC CCCTGTTGCG TCT

Gene models with high sequence identity

AT5G39570.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
E-value: 1e-26; Score: 118.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	PRICHEXTENSN	0.0000000083
FPrintScan	PRICHEXTENSN	0.0000000083
FPrintScan	PRICHEXTENSN	0.0000000083
FPrintScan	PRICHEXTENSN	0.0000000083

See the detailed result >

AT5G39570.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR