K15603

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15603

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15603

Determination of introduced cDNA(s)

  • J033061F13 - Rice Full-length cDNAs - Original: J033061F13

    full reading [+] show sequence

    Nucleotide sequence: J033061F13 - full reading 
    TGAACCATCA AACCACACAC CAGACAATAC TTACTACCAC TACTACTGCT 
    GCTGCTGCCA GTTCTAGCTA GCCTACTGCT CTTCTCCGAG CTGAAGATTT 
    TTCGAGCTAG CTAGGATGGC AGCCAGAATG GGCAGCAAGG TCGCTGCAAT 
    CCTCGCGATT CTGTCCGTGC TCGTGGTGCA TGGCTCTTGC AAGGGGCATC 
    CTGTGAACTA CAACGTCTCC GACGCCTCCG CCTACGGCTC CGGCTGGCTC 
    CCTGCCCGGG CAACCTGGTA TGGCGCTCCC ACCGGCGCCG GCCCTGACGA 
    CAACGGCGGC GCTTGCGGGT TCAAGAACGT GAACCAGTAA CCATTCTCGT 
    CCATGACCTC CTGCGGCAAC GAGCCCATCT TCAAGGACGG CAAGGGCTGC 
    GGCTCATGCT ACCAGATCAG GTGCAACAAG GACCCGTCGT GCTCGGGCAA 
    CATCGAGACG GTGATCATCA CCGACATGAA CTACTACCCC GTGGCCAGGT 
    ACCACTTCGA CCTGAGCGGC ACGGCGTTCG GCGCCATGGC CAAGCCGGGG 
    CTCAACGACA AGCTCCGCCA CTCGGGCATC ATCGACATCC AGTTCAGGCG 
    CGTCCCCTGC AACTACCCGG GCCTCAAGAT CAACTTCCAC GTCGAGGAGG 
    GCTCCAACCC GGTGTACTTC GCCGTGCTCG TCGAGTACGA GGACCTCGAC 
    GGCGACGTCG TGCAGGTCGA CCTCATGGAG TCCAAGTCGG CGTACGGCGG 
    CGCCACCGGC GTCTGGACGC CGATGAGGGA GTCGTGGGGC TCCATCTGGC 
    GCCTCGACTC CAACCACCGC CTCCAGGCGC CCTTCTCCCT CCGCATCCGC 
    AGCGACTCCG GCAAGACGCT CGTCGCCAAC AACGTCATCC CGGCGAACTG 
    GTCCCCCAAC TCCAACTACC GCTCCATCGT CCAGTTCAGC TAGATCAATC 
    ATCCACTGCT GATCGAATAT GGAATCATAT TGGCTCGCGA TCGATCGATC 
    GATCGATTAG TTTATTCTCT ACTACTGCTG CTGCAAAATT TGCGTGGGAT 
    TGAGGTGTTT TTTTTTATTA GGCGAGGCCT CATGTGCTGT CTGGTCTAGT 
    GTGTGAAGTG GTGAAGTGAT GCATGTGTGG GAAAATGGAG GAGGGGCACA 
    GTAATACAGT ATGTGCATGT GCTCTCCCGC CCACTGTCAC TGTACTACCC 
    AGTGCTTTGT AACCAAATCT TAAGGCTACA GAATTATAAA TACAATGCTT 
    AAGTTAATTA CCT

    Gene models with high sequence identity

    1. AT1G65680.1 [+] show detail - expansin B2
      E-value: 5e-60; Score: 228.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart no description 0.00013
    FPrintScan Expansin/Lol pI 0.0000036
    FPrintScan Expansin/Lol pI 0.0000036
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Major pollen allergen Lol pI 1e-48
    FPrintScan Expansin/Lol pI 1.1e-19
    FPrintScan Expansin/Lol pI 1.1e-19
    FPrintScan Expansin/Lol pI 1.1e-19
    FPrintScan Expansin/Lol pI 1.1e-19
    HMMPfam Pollen allergen/expansin, C-terminal 6.9e-31
    HMMPfam Rare lipoprotein A 9.8e-21
    Gene3D Pollen allergen, N-terminal 0.00000017
    Gene3D Pollen allergen, N-terminal 7.7e-32
    Gene3D Pollen allergen/expansin, C-terminal 3.9e-32
    ProfileScan Expansin 45, endoglucanase-like 24.857
    ProfileScan Pollen allergen/expansin, C-terminal 24.534
    superfamily Barwin-related endoglucanase 0.00000057
    superfamily Barwin-related endoglucanase 1.1e-31
    superfamily Pollen allergen/expansin, C-terminal 4.6e-31

    See the detailed result >

    AT1G65680.1

    Model type
    Protein coding
    Short Description
    expansin B2
    Curator Summary
    member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR