K15606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15606

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15606

Determination of introduced cDNA(s)

J023066C10 - Rice Full-length cDNAs - Original: J023066C10

full reading [+] show sequence

GGGAAAACCC CACGACGCCG TCGCCACCGT TCGTCTCCGC CTCCGCCTCC 
GCCGCCGGAA ATGGCGGCCA CCTCCCTCCT CTCCCTCCCC TCGCTCCGCC 
TCACCCACCG CCTCCTCGTC CCCGCGTCGT CGTCCGCCCC AGCCTCCCGC 
TCCCAGTTCC AAACGCTCGC CGCGAAGAAG GCAGCCGTCG CCACGGGCAC 
CGGCGAGGGC GGCGGCGGGG GGCGTGGAGC GGGCGGCGGG CTGCTGTCGG 
TGCTCGACCG GGCGATGGCG GACGAGGAGG AGTACCGCCG GGCGCGCGCG 
CAGGTGCACC GTAAGGGCGT GGAGGTGGAG GGGTACGCCA TCGAGGGGGT 
CTCCGTCGGC GGGCACGAGA CCTGCGTCAC CGTGCCGTCC CTCAACGTCG 
CCTTCGACAT CGGCCGCGGG CCGCTCTTCG CCGTGAGCCA GGACTACCTC 
TTCATCACCC ACGCCCACCT CGACCACATC GGTGGTCTCC CAATGTACAT 
AGCAACTCGT GGCCTCTATA ATTTGAAGCC ACCCGTTGTA TTTGTACCAC 
CATGTATCAA GGATGATGTT GAGGATCTAC TTCAAATCCA TCGTAGAATG 
AGTCAAGTCG ACCTTAAAGT GGAATTGGTT GCGCTTGATT TGGGGGAGAC 
ATTTGAAATA CGTAATGACC TTGTTGCCAG ACCATTTGAG ACTCACCATG 
CTATACCCAG CCAGGGTTAT GTCATCTACT CTGTTCGGAG AAAGTTGAAA 
AAACAGTATG CTCACTTGAA GGGTAATCAA ATAATGAAAA TGAAGCAATC 
AGGCGCTGAG ATTACAGATA CTATACTATA TCCAGAAGTT GCCTTTACAG 
GTGACACAAA GTCTGATTTT ATTCTTGACC CACGAAATGC AGATGCCCTG 
AGAGCAAAAG TCCTTATAAC TGAGGCAACC TTCCTAGATG ACCAAATTGA 
TGTTGATCAT GCTCGGGAGC ATGGCCACAT GCATCTCTCT GAGATAATGG 
AGCACTCCCA ATGGTTTAGA AACAAAGCCA TTGTACTGAC ACATTTCTCA 
AATCGATATA GTCTTGAGGA TATTAGACAA GCTGTTTCCA AACTACAGTC 
AAAGTTATCT TCAAAGGTTG TTGCACTGAC GGAAGGCTTC AAATCTGACT 
ATAGATAGTG TATAGAAGTA GGTCAGCTGT GCTTCTCACC CTTACTTGCT 
GAGAATAACT TGAGTTACTT ACACTAGGAA TTGGCCATTC ATGAGGAAAA 
AGGGACAGAA TTAATAGGTT TGTGCTGTTT GGCTTTTGTA TGTGGCATTT 
ATATCTCCTA TCTTTCTATA TTAGAAAATA AAGTTTATAT AGCATTATAA 
CT

Gene models with high sequence identity

AT2G04530.1 [+] show detail - Metallo-hydrolase/oxidoreductase superfamily protein
E-value: 2e-116; Score: 416.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Lactamase_B	8.5e-06
superfamily	Metallo-hydrolase/oxidoreductase	7.7e-21
Gene3D	no description	3e-58
HMMPanther	RIBONUCLEASE Z, CHLOROPLAST	1.6e-114
HMMPanther	RIBONUCLEASE Z	1.6e-114

See the detailed result >

AT2G04530.1

Model type: Protein coding
Short Description: Metallo-hydrolase/oxidoreductase superfamily protein
Curator Summary: Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast.
Computational Description: CPZ; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: tRNAse Z1 (TAIR:AT1G74700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR