K15619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15619

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15619

Determination of introduced cDNA(s)

  • J013111D24 - Rice Full-length cDNAs - Original: J013111D24

    full reading [+] show sequence

    Nucleotide sequence: J013111D24 - full reading
    GACCTGACAC GCCTGCCATG CCTCCCGCCC TCACCTCCAA CCCCCCCTCC 
    TTCCGCCCCC TCTCCACCCC TCTAACCCGC CGCCGTGCCG CCACAACCTT
    CCTCTGCCGT GTCGGCCCTG GCAAGCCTTC CAAGGACACC GGCGCGGATG
    ACGAGCCGAA GAAGAGGTCG TTCTTCGCCG ATTTCGGTAA GCTCTCGGAT
    GGAAGGTCGC TGATACCGGC CTTCCCGCCG GCCGCGGCTG GGTCTCTGTT
    CGCCGGCGGG AGGGGGAGGA AGGACCCGCA GACAGTGTTC GTCGCGGGCG
    CCACGGGGCA GGCGGGAGTT CGCATCGCGC AGACGCTGCT GCGGCAGGGG
    TTCGCCGTGC GCGCCGGGGT GCCGGACCTC GCGTCCGCCC AGGAGCTGGC
    GCGGCTCGCC TCCGCGTACC GGCTCATTTC CCCCACCGAG GCGCGCCGAC
    TCAACGCGGT GGAGTCCGAT TTCGAGGACC CCGAGGCGAT CGCCAAGTCC
    ATCGGCCCTG CAACTAAGGT GGTGGTTACA GTCGGCGCAG CTGAGAAGGG
    GCCCGACGGC GGTGTGGTCA CCACCGACGA GGCGCTCCGA GTTGTGCAGG
    CTGCTGACCT TGCCGGCGTG ACACACGTTG TGGTGGTGTA CGACCTGGGG
    GCCGGTGACC CCAGTGGTGA GTCGACGTAC AATGTGCTCG ACGGGTTCAC
    GTCCTTCTTC TCGAACCTCT TCTCCCGTGT GCAGTCCTTG CCACTAAACG
    AGTTCTTGGC TAAGGTGGTG GAGACCGACG TCAGGTACAC TCTCATCAAG
    ACGTCACTCA CAGATGACTA CAGCCCTGAG AGCACCTATG GCTTGGTCCT
    GGCCAAAGAG GGCGCGTCCA GCACTACTTC CTCAACAGAA ACCGGCAAGG
    TGTCCAAGTT GCAGATTGCT GGTCTTGTGG CAGATGTCTT CTCCAACGTG
    GCAGTCGCGG AGAACAAGGT TGTCCAAGTT TCCACTAGCT CATCAGTAAC
    ATCCAAGACC ATAGAGGAGG CTTTCTCAGC TATCCCTGAG GACAGTAGAA
    GGAAGGAGTA CCAAGATGCT GTTGCAAAAG CACAGGCAGA AGAGGAGACT
    CGGGCTTCGC AGCGAACTCG TCAGGCAGAA GAGGACACTA CTACGGTCAA
    AGCCGGGGGG AAGAAGACGC CCTCTGATGA GGCAGCTGCA AGTGAGGCGC
    AAGCTTCTCT GGAGAACCTT CTGAGCAGAG CCAAAGGGTT CGGCACGGAC
    TTCTCATGGG AGAAGCTCAG CACACAACTT GCAGGAGTGG CCACTCAGGA
    CTCAGACGAG GTGGAACCAA AAGCAAAGAA GCTGGCACCA CAGAGAGCTG
    TTGTGAAGCC CGCGGCGCAG AAGACAAGAC CAACACCAAA GCAGCCGGAA
    TCCAAGCCGG ATGTGAGGCC CGTGTTTGGG GGACTCTTCA AGCAAGAAAC
    AATCTTTGTG GATGAGGACT GAGCTAATGC AGACTCTGCC ATTTTTCTTA
    ATCTTTTGTA TGCTATATCT ATGAAGCTCT TGGTGTATTC TTGGAAAGTG
    AATGAGTGAC AGTTGTATAA AATTGGCTGC AAAACCGTAT AACATTCTCT
    GCAGGTGAGA ATTGTTCGC

    Gene models with high sequence identity

    1. AT3G46780.1 [+] show detail - plastid transcriptionally active 16
      E-value: 4e-101; Score: 365.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.2e-12
    Gene3D NAD(P)-binding domain 5.5e-15
    HMMPfam NmrA 8.4e-06
    Coil coiled-coil 0

    See the detailed result >

    AT3G46780.1

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 16
    Computational Description
    plastid transcriptionally active 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1243 Blast hits to 1093 proteins in 359 species: Archae - 5; Bacteria - 555; Metazoa - 73; Fungi - 75; Plants - 168; Viruses - 22; Other Eukaryotes - 345 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033107B18 - Rice Full-length cDNAs - Original: J033107B18

    full reading [+] show sequence

    Nucleotide sequence: J033107B18 - full reading
    AGAGAGAGCG AGGCACAGCT ACCGGCGGCG CAGCCACACA GCAGCAGCAG 
    GTGAGGAGGA GAGGAGACCC GCCGCCGCCG CCGCCATGGG TATCTCGCGT
    GATTCCATGC ACAAGCGCCG CGCCACGGGC GGCAAGCAGA AGGCATGGCG
    CAAGAAGCGA AAGTATGAGC TCGGAAGGCA GCCTGCCAAC ACCAAGCTGT
    CAAGCAACAA GACAGTGAGG AGGGTGCGTG TCCGTGGAGG TAATGTGAAA
    TGGAGGGCCC TCCGTTTGGA TACTGGCAAC TACTCATGGG GAAGTGAGGC
    CGTGACCCGC AAGACCCGTA TCCTTGATGT GGTCTACAAT GCATCCAACA
    ATGAGCTTGT CAGGACTCAG ACCCTTGTAA AGAGTGCTAT TGTGCAAGTT
    GATGCTGCCC CCTTCAAGCA GTGGTACCTC ACTCACTATG GAGTGGATAT
    TGGTAGAAAG AAGAAGGCTC CTGCAGCCAA GAAGGATGCT GAGGGGCAGG
    ATGCTGAAGC TACCACAGAG GAAGCGAAGA AAAGCAACCA TGTTGTCAGG
    AAGCTTGAGA AGCGCCAACA GGGACGCACA CTTGACGCCC ACATCGAAGA
    ACAGTTTGGC AGTGGGAGGT TGCTGGCCTG CATTTCTTCC CGCCCTGGGC
    AGTGTGGCCG AGCAGATGGC TATATCCTTG AGGGCAAAGA GCTGGAATTC
    TACATGAAGA AGCTCCAGAG GAAGAAGGGC AAGGGTGCCT CAGCTTAGAG
    CAAGTCTTTC TTTGTTGCTG GTTCTACACT GAAAGAACTA CCCTTTTTTG
    TTCCCTGAGA GCTCCTATGT TATGTTTGCA GACGCATAGC TGTTTTTTTA
    GGATTAAACA ACTTTAGCAT GATGACATGA GAATGGGTTA TGTACTCTGG
    ATGTTATTAA GTTAAAATAT TTACTTTCTG CC

    Gene models with high sequence identity

    1. AT5G59240.1 [+] show detail - Ribosomal protein S8e family protein
      E-value: 3e-90; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S8e, conserved site 0
    HMMTigr Ribosomal protein S8e 2.9e-58
    HMMPanther 40S RIBOSOMAL PROTEIN S8 5.4e-155
    HMMPanther 40S RIBOSOMAL PROTEIN S8 5.4e-155
    HMMPfam Ribosomal protein S8e/ribosomal biogenesis NSA2= 1.2e-51
    Coil coiled-coil 0

    See the detailed result >

    AT5G59240.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S8e family protein
    Computational Description
    Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR