K15619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) desaturated green (PATO:0001272) (Rosette leaf::Color::pale)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15619

Determination of introduced cDNA(s)

J013111D24 - Rice Full-length cDNAs - Original: J013111D24

full reading [+] show sequence

GACCTGACAC GCCTGCCATG CCTCCCGCCC TCACCTCCAA CCCCCCCTCC 
TTCCGCCCCC TCTCCACCCC TCTAACCCGC CGCCGTGCCG CCACAACCTT 
CCTCTGCCGT GTCGGCCCTG GCAAGCCTTC CAAGGACACC GGCGCGGATG 
ACGAGCCGAA GAAGAGGTCG TTCTTCGCCG ATTTCGGTAA GCTCTCGGAT 
GGAAGGTCGC TGATACCGGC CTTCCCGCCG GCCGCGGCTG GGTCTCTGTT 
CGCCGGCGGG AGGGGGAGGA AGGACCCGCA GACAGTGTTC GTCGCGGGCG 
CCACGGGGCA GGCGGGAGTT CGCATCGCGC AGACGCTGCT GCGGCAGGGG 
TTCGCCGTGC GCGCCGGGGT GCCGGACCTC GCGTCCGCCC AGGAGCTGGC 
GCGGCTCGCC TCCGCGTACC GGCTCATTTC CCCCACCGAG GCGCGCCGAC 
TCAACGCGGT GGAGTCCGAT TTCGAGGACC CCGAGGCGAT CGCCAAGTCC 
ATCGGCCCTG CAACTAAGGT GGTGGTTACA GTCGGCGCAG CTGAGAAGGG 
GCCCGACGGC GGTGTGGTCA CCACCGACGA GGCGCTCCGA GTTGTGCAGG 
CTGCTGACCT TGCCGGCGTG ACACACGTTG TGGTGGTGTA CGACCTGGGG 
GCCGGTGACC CCAGTGGTGA GTCGACGTAC AATGTGCTCG ACGGGTTCAC 
GTCCTTCTTC TCGAACCTCT TCTCCCGTGT GCAGTCCTTG CCACTAAACG 
AGTTCTTGGC TAAGGTGGTG GAGACCGACG TCAGGTACAC TCTCATCAAG 
ACGTCACTCA CAGATGACTA CAGCCCTGAG AGCACCTATG GCTTGGTCCT 
GGCCAAAGAG GGCGCGTCCA GCACTACTTC CTCAACAGAA ACCGGCAAGG 
TGTCCAAGTT GCAGATTGCT GGTCTTGTGG CAGATGTCTT CTCCAACGTG 
GCAGTCGCGG AGAACAAGGT TGTCCAAGTT TCCACTAGCT CATCAGTAAC 
ATCCAAGACC ATAGAGGAGG CTTTCTCAGC TATCCCTGAG GACAGTAGAA 
GGAAGGAGTA CCAAGATGCT GTTGCAAAAG CACAGGCAGA AGAGGAGACT 
CGGGCTTCGC AGCGAACTCG TCAGGCAGAA GAGGACACTA CTACGGTCAA 
AGCCGGGGGG AAGAAGACGC CCTCTGATGA GGCAGCTGCA AGTGAGGCGC 
AAGCTTCTCT GGAGAACCTT CTGAGCAGAG CCAAAGGGTT CGGCACGGAC 
TTCTCATGGG AGAAGCTCAG CACACAACTT GCAGGAGTGG CCACTCAGGA 
CTCAGACGAG GTGGAACCAA AAGCAAAGAA GCTGGCACCA CAGAGAGCTG 
TTGTGAAGCC CGCGGCGCAG AAGACAAGAC CAACACCAAA GCAGCCGGAA 
TCCAAGCCGG ATGTGAGGCC CGTGTTTGGG GGACTCTTCA AGCAAGAAAC 
AATCTTTGTG GATGAGGACT GAGCTAATGC AGACTCTGCC ATTTTTCTTA 
ATCTTTTGTA TGCTATATCT ATGAAGCTCT TGGTGTATTC TTGGAAAGTG 
AATGAGTGAC AGTTGTATAA AATTGGCTGC AAAACCGTAT AACATTCTCT 
GCAGGTGAGA ATTGTTCGC

Gene models with high sequence identity

AT3G46780.1 [+] show detail - plastid transcriptionally active 16
E-value: 4e-101; Score: 365.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	1.2e-12
Gene3D	NAD(P)-binding domain	5.5e-15
HMMPfam	NmrA	8.4e-06
Coil	coiled-coil	0

See the detailed result >

AT3G46780.1

Model type: Protein coding
Short Description: plastid transcriptionally active 16
Computational Description: plastid transcriptionally active 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1243 Blast hits to 1093 proteins in 359 species: Archae - 5; Bacteria - 555; Metazoa - 73; Fungi - 75; Plants - 168; Viruses - 22; Other Eukaryotes - 345 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033107B18 - Rice Full-length cDNAs - Original: J033107B18

full reading [+] show sequence

AGAGAGAGCG AGGCACAGCT ACCGGCGGCG CAGCCACACA GCAGCAGCAG 
GTGAGGAGGA GAGGAGACCC GCCGCCGCCG CCGCCATGGG TATCTCGCGT 
GATTCCATGC ACAAGCGCCG CGCCACGGGC GGCAAGCAGA AGGCATGGCG 
CAAGAAGCGA AAGTATGAGC TCGGAAGGCA GCCTGCCAAC ACCAAGCTGT 
CAAGCAACAA GACAGTGAGG AGGGTGCGTG TCCGTGGAGG TAATGTGAAA 
TGGAGGGCCC TCCGTTTGGA TACTGGCAAC TACTCATGGG GAAGTGAGGC 
CGTGACCCGC AAGACCCGTA TCCTTGATGT GGTCTACAAT GCATCCAACA 
ATGAGCTTGT CAGGACTCAG ACCCTTGTAA AGAGTGCTAT TGTGCAAGTT 
GATGCTGCCC CCTTCAAGCA GTGGTACCTC ACTCACTATG GAGTGGATAT 
TGGTAGAAAG AAGAAGGCTC CTGCAGCCAA GAAGGATGCT GAGGGGCAGG 
ATGCTGAAGC TACCACAGAG GAAGCGAAGA AAAGCAACCA TGTTGTCAGG 
AAGCTTGAGA AGCGCCAACA GGGACGCACA CTTGACGCCC ACATCGAAGA 
ACAGTTTGGC AGTGGGAGGT TGCTGGCCTG CATTTCTTCC CGCCCTGGGC 
AGTGTGGCCG AGCAGATGGC TATATCCTTG AGGGCAAAGA GCTGGAATTC 
TACATGAAGA AGCTCCAGAG GAAGAAGGGC AAGGGTGCCT CAGCTTAGAG 
CAAGTCTTTC TTTGTTGCTG GTTCTACACT GAAAGAACTA CCCTTTTTTG 
TTCCCTGAGA GCTCCTATGT TATGTTTGCA GACGCATAGC TGTTTTTTTA 
GGATTAAACA ACTTTAGCAT GATGACATGA GAATGGGTTA TGTACTCTGG 
ATGTTATTAA GTTAAAATAT TTACTTTCTG CC

Gene models with high sequence identity

AT5G59240.1 [+] show detail - Ribosomal protein S8e family protein
E-value: 3e-90; Score: 328.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Ribosomal protein S8e, conserved site	0
HMMTigr	Ribosomal protein S8e	2.9e-58
HMMPanther	40S RIBOSOMAL PROTEIN S8	5.4e-155
HMMPanther	40S RIBOSOMAL PROTEIN S8	5.4e-155
HMMPfam	Ribosomal protein S8e/ribosomal biogenesis NSA2=	1.2e-51
Coil	coiled-coil	0

See the detailed result >

AT5G59240.1

Model type: Protein coding
Short Description: Ribosomal protein S8e family protein
Computational Description: Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link: InterPro Scan - TAIR