K15624

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15624

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15624

Determination of introduced cDNA(s)

  • J033119P16 - Rice Full-length cDNAs - Original: J033119P16

    full reading [+] show sequence

    Nucleotide sequence: J033119P16 - full reading 
    GATTCCCTCC CCTCTCCACT CTCCGCCCTA GAGCTCGACG GCGGCGGCAA 
    CAAGGGCTGG GGGATGAAGA TATCCGTGAA GACACTCAAG GGATCCACCT 
    TCCAGATCGA GGTGGACTCC GCGCAGAAGG TTGCTGATGT GAAAAGGATA 
    ATCGAGACTA CTCAAGGACA GCACATTTAC CCAGCTGAGC AACAGATGCT 
    CATTCATCAG GGGAAGGTGC TCAAGGATGA CACCACATTG GATGAAAACA 
    AAGTTCTTGA AAACAGCTTC CTTGTTATAA TGCTTAGACA GGGTAAGGGC 
    TCATCAAGTT CAGCTCCTGC TACATCTAAG GCACCCTCAA ATCAGGCTCC 
    CCCTACTCAA ACAGTGCCTG CAGCTCCTGC ATCTCAAGCA CCAGTTGCAC 
    CAGCAACTAC TGTACCTGTC ACTGTCAGTG CTCCTACCCC AACTGCCACA 
    GCTTCCCCAG CTCCTGCTGT TGCTGTATCC TCTGAAGCTG ATAACTACGG 
    TCAGGCCACC TCAAACCTTG TTGCTGGCAG CAATCTAGAG GCAACAATTC 
    AATCAATTCT TGAAATGGGT GGTGGAATAT GGGATAGAGA CATTGTGCTG 
    CATGCTCTAA GCGCTGCATT CAACAACCCG GGGAGGGCTG TTGAATATCT 
    GTACTCTGGT GTTCCTGAGC AGATGGACAT TCCAGTTCCA CCTCCGAGTA 
    TACAGCCAGC CAATCCTACC CAGGCTTCAC AGGCAACTCA ACCAGCAGCT 
    CCATCAATTC TTTCGTCTGG ACCAAACGCT AGTCCCTTGG ACCTCTTTCC 
    TCAAGCCCTT CCAAATGCTT CCACCGATGC TGCTGGTCTA GGAAATCTTG 
    ATGCTTTGCG CAATAATGCA CAATTCCGAA CCTTGCTTTC TTTAGTGCAA 
    GCCAATCCTC AAATTTTACA GCCATTGCTT CAAGAATTGG GGAAACAAAA 
    TCCCCAGATT TTGCAGCTGA TTCAGGAAAA CCAAGCTGAG TTCCTCCACT 
    TAATCAATGA ACCAGCTGAG GGTGATGATG AAGAGAATTT GCTAGACCAG 
    TTTCCAGAGG CAATGCCACA GACCATAGCA GTTACTCCAG AGGAGAATGA 
    AGCCATACTT CGTCTTGAAG CAATGGGCTT TGACCGCGCG CTTGTTCTGG 
    ACGTGTTCTT CGCTTGCAAC AAGGACGAGC AGCTGGCGGC AAACTATCTC 
    CTAGATCACA TGAACGAGTT CGACGACGAG GGGCCACCAT AAGACACGCG 
    GATGGAATAC TTGTCAAGCT CAAACCTGGT ATCATTGGAG CAAAGGGTTT 
    GTGACCCGTA GTCCGTAGAG CAAAAGGCTT AGTAAAACCT TTTTATTTTA 
    TTTTATTTTT TTGTGGATTC GTCTCCTTCT GTTCCTTCTT TTCTTTCATT 
    AGTCTGTAAT TCTTTTCAGT TTGGCTTTTA CTTTCTTGCG TACATACTCT 
    AGATTACCTT TTTTACAGAC TTGATAACGG AGGTATAAAA AGGTTCAGAG 
    CCCGTCTGCA TTC

    Gene models with high sequence identity

    1. AT5G38470.1 [+] show detail - Rad23 UV excision repair protein family
      E-value: 7e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UV EXCISION REPAIR PROTEIN RAD23 6.9e-154
    HMMSmart Ubiquitin 5e-19
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 1.8e-05
    HMMSmart Heat shock chaperonin-binding 1.1e-06
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 3.9e-08
    FPrintScan UV excision repair protein Rad23, C-terminal 2.9e-31
    FPrintScan UV excision repair protein Rad23, C-terminal 2.9e-31
    FPrintScan UV excision repair protein Rad23, C-terminal 2.9e-31
    FPrintScan UV excision repair protein Rad23, C-terminal 2.9e-31
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 10.86
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 13.39
    ProfileScan Ubiquitin supergroup 19.499
    superfamily Ubiquitin-like 1.2e-24
    superfamily XPC-binding domain 2.6e-19
    superfamily UBA-like 8.6e-12
    superfamily UBA-like 1.6e-08
    Gene3D no description 1e-21
    Gene3D no description 3.4e-13
    Gene3D XPC-binding domain 3.9e-20
    Gene3D no description 3.8e-15
    HMMPfam XPC-binding domain 1.2e-21
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 3.1e-10
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 2.3e-06
    HMMPfam Ubiquitin 9.8e-17
    HMMTigr UV excision repair protein Rad23 2.2e-123

    See the detailed result >

    AT5G38470.1

    Model type
    Protein coding
    Short Description
    Rad23 UV excision repair protein family
    Curator Summary
    Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
    Computational Description
    RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR