K15633

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15633

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15633

Determination of introduced cDNA(s)

  • J033123G17 - Rice Full-length cDNAs - Original: J033123G17

    full reading [+] show sequence

    Nucleotide sequence: J033123G17 - full reading 
    GACTCTCCAC CGGCACCCTG CATTTACTGC TCCCCCATCA CTCGCCCCGG 
    CTTCCTTGAG CGCGATCTCC AGATCATCTT TTGTGTAGCG AGAAAGCTGA 
    CGACGGGGAA GGGCGGCGTG GTCAGCATGG TGCCGCGCGA GCAGGCGGAG 
    GAGGCCATCG TGGCTGACAG CAACGGCAAG GAGGAGGAGG TCGGGGTGAT 
    GGGCGTCAGC GCCGGGGAGC ACGGCGCCGA CGACCACCAC GGCGGCGGCG 
    GCAAGTTCAG CATGAAGAAC CTGCTCTGGC ACGGCGGCTC CGTCTGGGAC 
    GCCTGGTTCA GCTGCGCCTC TAACCAGGTC GCGCAGGTGC TCCTGACGCT 
    GCCGTACTCC TTCTCGCAGC TCGGGATGCT CTCGGGCGTG CTGCTGCAGC 
    TGTTCTACGG TTTCATGGGC AGCTGGACCG CCTACCTAAT CAGCGTCCTC 
    TACGTCGAGT ACCGCTCCCG CAAGGAGAAG GAAGGCGTCA GCTTCAAGAA 
    CCACGTCATC CAGTGGTTCG AGGTGCTGGA TGGGCTACTG GGCCCGTACT 
    GGAAGGCGGC CGGACTCGCC TTCAACTGCA CGTTCCTCCT CTTCGGCTCC 
    GTCATCCAGC TGATCGCCTG CGCGAGTAAC ATCTACTACA TCAACGACCG 
    GCTGGACAAG CGGACGTGGA CGTACATCTT CGGCGCGTGC TGCGCCACCA 
    CGGTGTTCAT CCCGTCGTTC CACAACTACC GGATCTGGTC CTTCCTGGGC 
    CTCGGCATGA CCACCTATAC CGCTTGGTAC CTCGCCATCG CCGCCCTCCT 
    CAACGGCCAG GCCGAAGGCA TCACCCACAC CGGTCCAACC AAGCTGGTGC 
    TGTACTTCAC CGGCGCCACC AACATCCTCT ACACCTTCGG CGGCCACGCC 
    GTCACAGTGG AGATCATGCA CGCGATGTGG AAACCGGCCA AGTTCAAGTA 
    CATCTACCTG CTGGCGACGC TGTACGTGTT CACGCTGACG CTGCCGTCGG 
    CGTCGGCCAT GTACTGGGCG TTCGGGGACG AGCTGCTGAC CCACTCCAAC 
    GCCTTCTCGC TGCTGCCCAA GACCGGGTGG CGCGACGCGG CGGTGATACT 
    GATGCTGATC CACCAGTTCA TCACGTTCGG GTTCGCGTGC ACGCCGCTCT 
    ACTTCGTGTG GGAGAAGGTG ATCGGCATGC ACGACACCAA GAGCATCTGC 
    CTCAGGGCGC TCGCGCGGCT CCCCATCGTC GTCCCCATCT GGTTCCTCGC 
    CATCATCTTC CCCTTCTTCG GCCCCATCAA CTCCGCCGTC GGCGCGCTCC 
    TCGTCAGCTT CACCGTCTAC ATCATCCCGG CACTCGCCCA CATCCTCACC 
    TACCGTACGG CCTCCGCGCG CATGAACGCG GCGGAGAAGC CACCGTTCTT 
    CCTGCCGAGC TGGACGGGGA TGTTCGTGCT CAACATGTTC ATCGTGGTGT 
    GGGTGCTCGT GGTGGGCTTC GGGCTCGGCG GCTGGGCCAG CATGGTCAAC 
    TTCATCAGGC AGATCGACAC GTTCGGGCTC TTCGCCAAGT GCTACCAGTG 
    TCCCAAGCCC GCCCCGGCGT TGGCGCAGTC GCCGGTGCCA TTGCCGCACC 
    ACTAGCGCGC GCCCGTTCCG CACCACCGCC GCCGCCGCGG CGGACCGTGA 
    CAACGTGCAC CGCCGAGCCC GGAGCAAGGA ACCTCGCTCT CCTGGCCGGC 
    ACGGCTGCAA AAATTCAGTG TTGCTTAGGT TTTGGTCGCC TTGTAATATA 
    CAAAGCCTCT CCTCCTGTGC TAGGGTGTCA CACCAAAATG GTAGAAGAAG 
    AAGAGGGCAT GGGTCCCTAC GATCTTGCCC CGGGCCGTCC GCTGCCGCGT 
    TGCTTTCCCC CGATCCTCGA TGGTGTCCTT GTGTTTGTTT GGCTTGCCCC 
    TCCCTCTGGC GATATATATG TGATGGTCGT CATGGCTTAT AAAGATTTTC 
    AGCTCATGTC ACATTTTC

    Gene models with high sequence identity

    1. AT5G01240.1 [+] show detail - like AUXIN RESISTANT 1
      E-value: 0; Score: 801.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUX1-LIKE AMINO ACID PERMEASE 3.8e-299
    HMMPanther AMINO ACID TRANSPORTER 3.8e-299
    HMMPfam Amino acid transporter, transmembrane 1.2e-78

    See the detailed result >

    AT5G01240.1

    Model type
    Protein coding
    Short Description
    like AUXIN RESISTANT 1
    Curator Summary
    Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
    Computational Description
    like AUXIN RESISTANT 1 (LAX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR