K15641

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15641

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15641

Determination of introduced cDNA(s)

  • J013116P12 - Rice Full-length cDNAs - Original: J013116P12

    full reading [+] show sequence

    Nucleotide sequence: J013116P12 - full reading 
    TATTTTCCTA GTGGCGAGCT CGAGGAGAGA GAGAGAGGAG GAGGAGAGGT 
    GGTTGCGCCT TGCGCGGTGA AAGGGTAGTT ACCGCCGCGG GCGACTCCGG 
    CGAGGAGGGG CGAGGGGCGG AGCTAGCGGC GGGGGAATGG GGGGTGGAGT 
    GGAGGAGAGG AAGGTGGTGG ACTTGGAGGA CGGGGACGGG GAGGAAGGGG 
    AGGATGCGGC GGCGGTGGCG GCGGGGTCGA GCAGGGAGAC GCGGATGCTG 
    CCGAGGATGC CGGTGCGGGT GCTGCTCGCT GAGGGCGACG ACTCCACGCG 
    CCACATCATC TGCGCGCTGC TCCGCAAGTG CGGGTATCGA GTTGCCGCAG 
    CCTCTGATGG TGTGAAAGCG TGGGACATAC TAAAGGAAAA ATCTTTCAAT 
    ATAGACCTTG TTTTAACTGA AGTTGAACTT CCCTTGATGT CTGGGTTCCT 
    GCTGCTCTCC ACGATCATGG AACATGACGC ATGCAAGAAT ATCCCCGTCA 
    TAATGATGTC TTCAAATGAT TCCGTTAGCA TGGTTTTCAA ATGCATGCTA 
    AAGGGTGCTG CAGATTTCCT TGTTAAGCCA ATACGGAAGA ATGAATTAAG 
    GAACTTATGG CAGCATGTTT GGAGAAAACA ACTGTCCAGC GGTGTTCTTG 
    ATGTGCAGCA TACTCAACAA GAAGATAATC TTACAGAAAG GCATGAGCAG 
    AAGACCGGAG TGACGAAAGC TGAACATGTG ACTGAAAATG TTGTCCACAA 
    GAACATGGAA TGCAGTGAAC AAGAAAGTGA TGCTCAAAGT TCATGTACAA 
    GGTCAGAACT GGAGGCTGAC AGTAGGCAAA CCAACAATTT ACTGGAATAT 
    AAGCAGCCAA TGGGAAGGCA TTTCTCCAAG CCTGACCACA AGAACACCGA 
    GAAAAATGGA GGGACTAAAA TTCATGCATC TAATGATGGC AACTTGATTC 
    CACGGAGGGA AGAGGATGCA TCACTGAGGA GGATGACATG TTCAAATGAT 
    ATTAATTGTG AGAAAGCTTC CAGGGATATG GAGCTGGTTC ATATTATTGA 
    CAATCAGCAG AAGAATAACA CACATATGGA GATGGATGTT GCGAGAGCAA 
    ATTCCCGTGG AAATGATGAC AAGTGCTTTT CCATTCCAGC ACACCAGTTA 
    GAACTTTCTC TCAGAAGATC TGACTACAGT AGATTAGAGA GCCAGGAGAA 
    AAATGAACGA AGAACACTGA ACCACTCAAC TTCATCTCCA TTTTCCTTGT 
    ACAACTGCAG GACAGCATCA TCTACCATTA ATGCTGGTGA TGCTCAGGCA 
    TGCAGCACCT CGGCAACACA TATAGATCTT GAAAACAAAA ATGGAGATTC 
    CAAAACTCCC TCTCAAGACA AGAGGGAAAC AAACCAACCT CCCATTAGAG 
    TTGTACCATT TCCTGTTCCT GTTGGAGGAC TAACATTTGA TGGGCAGCCA 
    TTCTGGAACG GTGCACCTGT GGCATCCCTT TTCTATCCAC AATCAGCTCC 
    TCCCATTTGG AATAGCAAAA CATCTACCTG GCAAGACGCA ACCACACAAG 
    CAATTTCTCT GCAGCAGAAT GGTCCAAAAG ATACGGATAC TAAGCAGGTT 
    GAAAATGTAG AGGAACAAAC TGCTCGGAGT CATCTAAGTG CTAATCGGAA 
    ACATCTCCGC ATTGAAATTC CTACAGATGA GCCGCGGCAT GTTTCTCCAA 
    CCACCGGTGA AAGTGGGAGC AGCACTGTGC TGGACAGCGC CAGAAAAACG 
    CTCAGTGGCA GTGTCTGTGA CAGCTCTTCC AACCACATGA TTGCCCCTAC 
    TGAATCATCA AATGTTGTTC CTGAAAATCC TGATGGTTTA CGCCACCTGA 
    GCCAACGAGA GGCTGCACTG AACAAGTTCC GGCTTAAGAG GAAAGACAGG 
    TGCTTTGAGA AGAAGGTGCG ATACCAGAGC AGGAAGCTAC TAGCCGAGCA 
    GCGACCGCGG GTTAAGGGTC AGTTTGTTCG GCAAGATCAT GGTGTCCAAG 
    GGAGCTAGGG CTGTCCAAAC TTCAGGAGAT TGCTGTGCCA CGGTTATCCT 
    GGTGGTCAGT GTCAGATTTT GTTTGAAGAG TGAAAGTATG ATTGCCCTGA 
    CCTACAGTCA GCAGTGTATG GTGGTGTTGC ATATATATAC AGGCTAACTT 
    CGTGTGCTAG GTTAGGCCAT GGACCTCGTA CATTGTAGAG TTTGTCAGTA 
    GGGATCATAT TTTGCTTCAG ATCTAGATAA GCTGCGTTTA TCATGTAGCA 
    CACGTATTTA TGTTTTCTAA ATTGTATCTA GCCAACAGTT AACGTGTAAG 
    CTGGACGTGT GTGGATGTAA GGTGTCAAGG ATATCCAAAG ACAAAGTTCT 
    TTTGTACAGT TTCTTACACT GAACATCGTT GGTGTAGTTT CATACTTTC

    Gene models with high sequence identity

    1. AT5G24470.1 [+] show detail - pseudo-response regulator 5
      E-value: 5e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) 1.4e-17
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 1.4e-17
    superfamily CheY-like 2.6e-30
    Coil coiled-coil 0
    ProfileScan Signal transduction response regulator, receiver domain 28.293
    ProfileScan CCT domain 15.378
    HMMSmart Signal transduction response regulator, receiver domain 1.4e-25
    Gene3D no description 4.8e-26
    HMMPfam Signal transduction response regulator, receiver domain 7.6e-22
    HMMPfam CCT domain 1.7e-19

    See the detailed result >

    AT5G24470.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 5
    Curator Summary
    Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 5 (PRR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 9 (TAIR:AT2G46790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR