K15642

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15642

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15642

Determination of introduced cDNA(s)

  • J013002P14 - Rice Full-length cDNAs - Original: J013002P14

    full reading [+] show sequence

    Nucleotide sequence: J013002P14 - full reading 
    GTCCATTCGT TTGCTCGTCT CTGACCACCA TTGGTTCCTG AAATTGAGTC 
    ATGGCTGCCA AGCTAGCTCG CCTCCACAGT CTCCGCGAAC GCCTCGGTGC 
    CACCTTCTCG TCTCATCCCA ATGAGTTGAT TGCACTCTTC TCTAGGTATG 
    TTAACCAGGG AAAGGGAATG CTCCAGCGTC ACCAGCTGCT TGCGGAGTTC 
    GATGCCTTGA TCGAAGCTGA CAAAGAGAAA TATGCTCCCT TTGAAGACAT 
    TCTCCGGGCT GCTCAGGAAG CCATTGTGCT GCCGCCCTGG GTTGCACTGG 
    CCATCAGGCC AAGGCCTGGT GTCTGGGACT ACATTCGGGT GAATGTAAGT 
    GAGTTGGCAG TGGAAGAGCT GAGTGTTTCT GAGTACTTGG CATTCAAGGA 
    ACAGCTTGTT GATGGACACA CCAACAGCAA CTTTGTTCTT GAGCTTGATT 
    TTGAGCCCTT CAATGCCTCC TTCCCGCGCC CGTCCATGTC CAAGTCCATC 
    GGAAATGGGG TGCAGTTCCT TAACCGTCAC CTGTCGTCCA AGTTGTTCCA 
    GGACAAGGAG AGCCTCTACC CCTTGCTGAA CTTCCTGAAA GCCCATAACC 
    ACAAGGGCAC GACAATGATG CTGAATGACA GAATTCAGAG CCTTCGTGGG 
    CTCCAATCAT CCCTTAGAAA GGCAGAAGAA TATCTGATGG GCATTCCTCA 
    AGACACGCCC TACTCGGAGT TCAACCACAG GTTCCAAGAG CTCGGTTTGG 
    AGAAGGGTTG GGGTGACTGT GCAAAGCGTG TGCTTGACAC CATCCACTTG 
    CTTCTTGACC TTCTTGAGGC CCCTGATCCG GCCAACTTGG AGAAGTTCCT 
    TGGAACTATT CCAATGATGT TCAATGTTGT TATCCTGTCT CCGCATGGAT 
    ACTTTGCCCA ATCCAATGTG TTGGGATACC CTGATACTGG TGGTCAGGTT 
    GTGTACATTT TGGACCAAGT CCGCGCTTTG GAGAATGAGA TGCTTTTGAG 
    GATCAAGCAG CAAGGCCTTG ATATCACACC TAAGATCCTC ATTGTAACCA 
    GGCTGTTGCC TGATGCTGTT GGTACTACAT GCGGCCAGCG TGTGGAGAAG 
    GTTATTGGAA CTGAGCACAC TGACATTCTT CGTGTTCCAT TCAGGAGTGA 
    GAATGGTATC CTCCGCAAGT GGATCTCCCG TTTTGATGTC TGGCCATTCC 
    TGGAAACATA CACTGAGGAT GTTGCAAACG AAATTATGAG GGAAATGCAA 
    GCCAAACCTG ATCTCATCAT TGGCAATTAC AGTGATGGAA ACCTTGTTGC 
    CACTCTGCTG GCTCACAAAT TAGGAGTTAC CCAGTGTACC ATTGCTCATG 
    CCTTGGAGAA AACCAAATAC CCCAACTCAG ACATATACTT GGACAAGTTT 
    GACAGCCAGT ACCACTTCTC ATGCCAATTC ACTGCTGATC TTATCGCCAT 
    GAATCACACT GATTTCATCA TCACCAGTAC ATTCCAAGAA ATTGCTGGAA 
    GCAAGGACAC TGTGGGGCAG TATGAATCAC ACATTGCATT CACCCTTCCT 
    GGGCTTTACC GAGTTGTGCA TGGCATAGAT GTTTTTGATC CCAAGTTCAA 
    CATTGTCTCT CCTGGAGCTG ACATGAGTGT CTACTTCCCG TACACCGAGG 
    CTGACAAGAG GCTCACTGCT TTCCACCCTG AAATTGAGGA GCTTCTCTAC 
    AGTGAAGTCG AGAACGATGA ACACAAGTTT GTATTGAAGG ACAAGAACAA 
    GCCAATCATC TTCTCCATGG CTCGTCTTGA CCGAGTGAAG AACATGACAG 
    GTCTGGTTGA GGTGTATGGT AAGAATGCAC ATCTCAGGGA TTTGGCAAAC 
    CTTGTGATTG TTTGTGGTGA CCACGGCAAT CAGTCCAAGG ACAGGGAGGA 
    GCAGGCTGAG TTCAAGAAGA TGTACGGTCT CATTGACCAG TACAAGTTGA 
    AGGGGCATAT CCGCTGGATC TCAGCTCAGA TGAACCGTGT TCGTAACGGG 
    GAGTTGTACC GATACATTTG TGACACCAAG GGAGTCTTTG TCCAGCCTGC 
    ATTCTATGAA GCGTTTGGTC TGACTGTCAT CGAAGCCATG ACATGTGGTT 
    TGCCAACAAT CGCAACATGC CATGGTGGCC CTGCTGAGAT TATTGTTGAT 
    GGGGTGTCTG GTCTGCACAT TGATCCTTAC CACAGTGACA AGGCTGCTGA 
    TATCTTGGTC AACTTCTTTG AGAAGTGCAA GCAGGGTTCA ACCTACTGGG 
    ACAATATTTC ACAGGGAGGT CTGCAGAGGA TTTACGAGAA GTACACCTGG 
    AAGCTGTACT CTGAGAGGCT GATGACCTTG ACTGGTGTAT ACGGATTCTG 
    GAAGTACGTA AGCAACCTTG AGAGGCGCGA GACTCGCCGT TACATTGAGA 
    TGTTCTATGC TCTGAAATAC CGCAGCCTGG CCAGCGCCGT CCCATTGGCT 
    GTCGATGGAG AGAGCACATC CAAGTAATGG AGGGGAAAAT ATGCATCTTC 
    AGCAGGAGAA GCCGTCAGCT GCATTCGAAT TTGATAATTT TCTGTAGTTG 
    TCATTTGGCA TCCATGTTTG CCATGGATGT GTACTATGTC TAAGGTTTCA 
    GTACTTTTGC GAGATTTTGG GCAGTGCTTG CCTCAAATAA ACGCCGGTTC 
    CTGGTGTTTA TCGTTCAGAA TTCAATGCAA TGTTTTATTG CCGCGCTTCC 
    TC

    Gene models with high sequence identity

    1. AT3G43190.1 [+] show detail - sucrose synthase 4
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Sucrose synthase, plant/cyanobacteria 0
    HMMPfam Sucrose synthase 0
    HMMPfam Glycosyl transferase, group 1 1.1e-33
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 2.1e-45
    HMMPanther SUCROSE SYNTHASE 0
    HMMPanther GLYCOSYLTRANSFERASE 0

    See the detailed result >

    AT3G43190.1

    Model type
    Protein coding
    Short Description
    sucrose synthase 4
    Curator Summary
    Encodes a protein with sucrose synthase activity (SUS4).
    Computational Description
    sucrose synthase 4 (SUS4); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: sucrose biosynthetic process, response to hypoxia; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 1 (TAIR:AT5G20830.2); Has 7692 Blast hits to 7689 proteins in 1582 species: Archae - 293; Bacteria - 4740; Metazoa - 106; Fungi - 81; Plants - 801; Viruses - 0; Other Eukaryotes - 1671 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR