K15646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15646

Determination of introduced cDNA(s)

J023082B09 - Rice Full-length cDNAs - Original: J023082B09

full reading [+] show sequence

GGCACGCACA TGCTGCGCCC CCACTCCAGT GGAGGAGTAC TCCACTAGGC 
GGCCACTCCT GTTGACGCCG AGTATAAACA AAACCCAAAA GCGGCGAGAG 
CAACCAAAGC CCAAGTTTGT GGGGGGCAAT AGCTCCCGTC GTCTCTCGCC 
GTCTCGTCAC ACGAGGAGGA AGAGGTCGAT CGATCGATCG AGATGGGGTC 
AGAGGCGGCG GCGGCGAGGC CGGTGGTGGT GACGGTGAAC GGGGAGAGGT 
ACGAGGCGGT GGGGGTCGAC CCGTCGACGA CGCTGCTCGA GTTCCTCCGC 
ACGCGGACCC CCGTCCGGGG CCCCAAGCTC GGCTGCGGCG AAGGTGGATG 
CGGCGCATGC GTGGTCGTCG TTTCCAAGTA CGACGCCGTC GCCGACGAGG 
TGACCGAGTT CTCGGCGAGC TCCTGCCTGA CGCTGCTCGG CAGCCTGCAC 
CACTGCGCGG TCACCACCAG CGAGGGCATC GGCAACTCCA GGGATGGCTT 
CCACGCCGTG CAGCGGCGGC TCTCCGGCTT CCACGCCTCG CAGTGCGGCT 
TCTGCACCCC GGGCATGTGC ATGTCCATCT ACTCCGCGCT CGCCAAGGCC 
GACAGGTGCT CGTCCCGTCC CTCGCCGCCG CCGGGGTTCT CCAAGCTCAC 
CGCCGCTGAG GCCGAGAAGG CCGTCTCCGG CAACCTGTGC CGCTGCACCG 
GCTACAGGCC CATCGTCGAC GCGTGCAAGA GCTTCGCCGC CGACGTCGAC 
CTCGAGGACC TTGGCCTCAA CGCCTTCTGG AAGAAAGGCG CCGACGACGA 
GCGCGCTGAC GTCGGCAAGC TGCCTGCATA CTCTGGTGGC GCCGCCGTCT 
GTACGTTCCC GGAGTTCCTC AAGTCGGAGA TAAGGTCATC CATGGGTCAA 
GCGAATGGTG GCGCTCCGGC GGTGGCGGTC ACCGGAGACG GCTGGTTCCA 
CCCCAAGAGC GTCGAGGAGT TCCACAGGTT GTTTGACTCT AACCTGTTCG 
ACGAAAGGTC TGTGAAGATT GTGGCATCGA ACACCGGCTC CGGAGTGTAC 
AAGGATCAAG ACCTCCATGA CAAGTACATC AACATCTCGC AGATTCTGGA 
ACTCTCAGCC ATCAATAGAA GCAGCAAGGG CGTCGAGATC GGAGCTGTCG 
TGTCTATCTC CAAAGCCATT GAGATATTGT CGGATGGAGG CGCAGTGTTC 
AGAAAGATTG CCGATCACCT GAGCAAAGTG GCCTCGTCGT TCGTCCAGAA 
CACGGCGACC ATTGGAGGCA ACATCATCAT GGCGCAGAGG CTGTCTTTCC 
CGTCGGACAT CGCAACGGTT CTTCTCGCTG CAGGATCAAC TGTCACCATC 
CAGGTGGCCG CCAAGAGGAT GTGCATCACT CTGGAGGAGT TCTTGAAGCA 
GCCTCCATGT GATTCCAGGA CGTTGTTGGT CAGCATCTCT ATCCCGGATT 
GGGGTTCAGA TGATGGCATC ACCTTTGAGT CGTTTCGTGC GGCTCCTCGT 
CCACTTGGCA ATGCTGTGTC ATATGTTAAT TCTGCATTCT TGGCAAGAAG 
TTCAGTGGAT GGATCATCAG GGAGCCATCT CATTGAGGAT GTTTGCTTGG 
CATTTGGCGC CTTCGGGGCC GAACACGCCA TCAGAGCTAG GGAGGTTGAG 
GAGTTCTTGA AGGGAAAATT GGTTAGTGCA CCAGTGATAC TTGAAGCAGT 
TCGGCTTCTT AAAGGTGTTG TTTCACCAGC TGAAGGCACA ACACATCCTG 
AATACAGAGT CAGCTTGGCC GTCAGTTATC TGTTCAGATT CCTGACTTCC 
CTTGCTAATG GCTTGGATGA GCCTGAAAAT GCTAATGTTC CCAATGGTTC 
ATGTACTAAT GGAACCGCAA ACGGTAGCGC TAATTCCTCT CCGGAGAAGC 
ACTCAAATGT TGACAGCTCT GATTTGCCAA TAAAATCAAG GCAAGAGATG 
GTTTTCTCTG ATGAATACAA ACCTGTTGGA AAGCCGATCG AGAAAACCGG 
AGCAGAGCTC CAAGCTTCTG GAGAGGCAGT GTATGTTGAT GACATCCCTG 
CTCCGAAGGA TTGCCTCTAT GGAGCATTTA TCTATAGCAC ACACCCTCAC 
GCTCACATAA AAGATATAAA CTTCAGATCA TCTTTGGCTT CACAGAAGGT 
CATCACAGTT ATCACTGCAA AGGACATTCC TACCGGTGGA GAAAATATTG 
GATCATGCTT CCCAATGCTT GGAGATGAAG CGCTTTTTCG TTCATCCTGT 
TTCTGAATTT GCCGGCCAGA ATATTGGTGT TGTGATTGCT GAAACACAAA 
AGTATGCCTA TATGGCGGCG AAGCAAGCTG TGATCGAATA TAGTACCGAA 
AATCTTCAGC CACCAATTCT GACAATAGAA GATGCTGTCC AGCATAACAG 
CTACTTCCCA GTTCCCCCAT TTTTAGCTCC TACGCCAATT GGTGACTTCA 
ACCAAGCTAT GTCTGAAGCT GATCACAAGA TCATAGATGG GGAGGTGAAA 
CTTGAATCCC AGTACTATTT CTACATGGAG ACACAGACGG CCTTAGCTAT 
CCCTGATGAA GATAACTGTA TAACCCTCTA TGTGTCGGCG CAACTACCTG 
AGATTACTCA AAATACTGTT GCGAGGTGCC TTGGCATTCC ATATCACAAT 
GTCCGTATCA TCACGAGAAG AGTTGGAGGA GGTTTTGGTG GAAAGGCAAT 
GAAAGCAATA CATGTTGCCG CTGCATGTGC TGTCGCCGCA TTCAAGCTGC 
GGCGTCCGGT TCGAATGTAC CTCGATCGCA AGACAGACAT GATCATGGCG 
GGAGGGCGGC ATCCGATGAA GGTAAAGTAC TCCGTCGGTT TCAAGTCCGA 
CGGCAAGATC ACGGGTCTGC ACTTTGATCT TGGAATGAAC GGCGGAATAT 
CGCCGGATTG CAGCCCGGTG TTGCCAGTCG CCATTGTCGG GGCTCTGAAG 
AAGTACAACT GGGGCGCTCT CTCCTTCGAC ATCAAGGTCT GCAAGACGAA 
CGTCTCGTCG AAGTCGGCGA TGCGGGCTCC CGGCGACGCG CAGGGCTCGT 
TCATCGCCGA GGCCATCGTC GAACACATCG CGTCCACTCT CTCAGTGGAC 
ACGAACGCCA TCAGGAGGAA GAACCTCCAC GACTTCGAGA GCCTCAAGGT 
GTTTTATGGG AATAGCGCCG GTGATCCTTC GACGTACAGT CTCGTCACCA 
TCTTCGACAA GCTGGCCTCG TCGCCGGAGT ACCAGCAGAG GGCCGCCATG 
GTCGAGCACT TCAACGCCGG CAACAGGTGG AAGAAGCGGG GCATTTCTTG 
CGTGCCGATC ACCTACGACG TGAGGCTCCG GCCAACTCCG GGGAAGGTGT 
CCATCATGAA CGACGGCTCC ATCGCCGTTG AGGTCGGCGG CGTCGAGATC 
GGGCAGGGGC TGTGGACGAA AGTGAAGCAG ATGACAGCGT TCGCGCTGGG 
CCAGCTCTGC GATGATGGCG GCGAGGGCCT CATCGACAAG GTCCGTGTCA 
TCCAGGCCGA CACCCTGAGC ATGATCCAGG GAGGCTTCAC CGGTGGGAGC 
ACGACCTCCG AGACTAGCTG CGAGGCTGTT CGGAAGTCGT GCGCCGCCCT 
CGTGGAGAGG TTGAAGCCCA TCAAAGAGAA GGCTGGCACG CCACCATGGA 
AATCCCTTAT TGCCCAGGCA AGCATGGCGA GTGTGAAGCT GACAGAGCAC 
GCGTACTGGA CGCCTGACCC CACGTTCACT AGCTACTTGA ACTATGGAGC 
TGCAATTAGT GAGGTGGAAG TCGATGTGCT GACGGGAGAA ACCACCATCC 
TGAGGAGCGA CCTCGTGTAC GACTGTGGGC AGAGCCTGAA TCCTGCTGTG 
GACTTGGGCC AGGTGGAAGG CGCATTCGTG CAAGGGATCG GCTTCTTCAC 
GAACGAGGAG TACACGACCA ACTCCGATGG GCTGGTCATC AACGACGGCA 
CGTGGACGTA CAAGATCCCC ACCGTGGACA CCATCCCCAA GCAGTTCAAC 
GTCGAGCTCA TCAACAGCGC CCGCGATCAC AAGCGCGTCC TCTCCTCCAA 
AGCGTCCGGT GAGCCGCCGC TGCTGCTGGC GTCGTCGGTG CACTGCGCGA 
TGAGGGAGGC GATCAGGGCG GCCAGGAAGG AGTTCGCCGG CGCCGGAGGC 
TCGCCGCTGA CGTTCCAGAT GGACGTGCCG GCGACGATGC CGATCGTCAA 
GGAGCTCTGC GGCCTTGACG TCGTGGAGAG ATATCTCGAG AGCTTTGCTG 
CCAAAGCCTA GAGATAGAAG GGTTCTTTGG CTTAGCTTTG TATAAACACC 
AACAATAATC TGCGCCTGGA TTTGTGTTGA TGTGGTATAT ATGTACAGAA 
CAAAAGGTGT TTTTTTGGGA AAAATAAAAT CATATGGATG GTATTGTTCT 
ATCATGTCTC ATGGAGTCAT GCTATCCAAA TG

Gene models with high sequence identity

AT2G27150.2 [+] show detail - abscisic aldehyde oxidase 3
E-value: 0; Score: 570.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Molybdopterin dehydrogenase, FAD-binding	2.7e-38
HMMPfam	[2Fe-2S]-binding	5.3e-22
HMMPfam	CO dehydrogenase flavoprotein, C-terminal	6.9e-20
HMMPfam	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	1.8e-19
HMMPfam	Ferredoxin	0.000000016
HMMPfam	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	7.8e-180
HMMPfam	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	0.000001
PatternScan	2Fe-2S ferredoxin, iron-sulphur binding site	0
HMMPanther	ALDEHYDE OXIDASE	0
HMMPanther	XANTHINE DEHYDROGENASE	0
HMMPanther	ALDEHYDE OXIDASE	0
HMMPanther	XANTHINE DEHYDROGENASE	0
superfamily	FAD-binding, type 2	2.2e-39
superfamily	[2Fe-2S]-binding	4.7e-35
superfamily	Ferredoxin	5.9e-26
superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	3.8e-24
superfamily	CO dehydrogenase flavoprotein, C-terminal	1.4e-17
superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	9.3e-168
superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	0.000000022
ProfileScan	Ferredoxin	10.081
ProfileScan	FAD-binding, type 2	19.557
Gene3D	Beta-grasp fold, ferredoxin-type	3.7e-28
Gene3D	no description	3.6e-28
Gene3D	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2	2.7e-19
Gene3D	CO dehydrogenase flavoprotein, C-terminal	0.00000011
Gene3D	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	1.6e-16
Gene3D	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	6.8e-29
Gene3D	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	5.9e-51

See the detailed result >

AT2G27150.2

Model type: Protein coding
Short Description: abscisic aldehyde oxidase 3
Curator Summary: Encodes the aldehyde oxidase delta isoform catalyzing the final step in abscisic acid biosynthesis.
Computational Description: abscisic aldehyde oxidase 3 (AAO3); CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: aldehyde oxidase 4 (TAIR:AT1G04580.1); Has 18285 Blast hits to 17524 proteins in 1277 species: Archae - 409; Bacteria - 10745; Metazoa - 1018; Fungi - 113; Plants - 280; Viruses - 0; Other Eukaryotes - 5720 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023100F02 - Rice Full-length cDNAs - Original: J023100F02

full reading [+] show sequence

GATTCCCCTT CCTCATCTCC GCCTCGCCTC CACCGGCCGT GATCTCGCCG 
CCGGCGCCGC CCCGCCGCCC CTGAGGCCTA CTAGTAGCGA CCTACAAGTA 
CCCTGTTTTG TACCATCCTA GGAGCGAATC CTCCCCCTGC GGCAGCGGTA 
GCAGATCGCG ATGGCCGCCT CGGCGCCTCC TCCGGCGGCG ACGAATCCAC 
CGGCTTCGAC CGCGCCCACG GAGGACGGGG AGGTGGAGGA GGGTGCCACG 
CCACCGAGAA CTTCTGCGTT GGGGACGGCG AACTGGGGTA CCGCCACCCT 
CGTCGGCGTC TTCGCCGGGC TGCTCTACGG CGGGAGCAAG GAGGCCAGCG 
CCTCTGTCAG CAAAGACGCT GAAGTGATGT TGAAGATGGG GAGCACCACA 
GACAAGCGTG AGCAGTATAG ATTGATGAGA GATGCAATGG AGAAAAGATT 
CATCCGGGTT GCCAAAGGAT CGCTAGTTGG TGGTGTTCGC CTTGGGATGT 
TTACTGCAAC TTTCTTTGGC ATACAGAACC TTCTTATTGA GAAACGTGGG 
GTGCATGATG TATTTAATAT AGCTGGAGCT GGCTCGGCTA CTGCAGCTGC 
ATTTGGACTT ATATTGCCAG GTTCACCAAT GTGGCGTGCA AGGAATGTAT 
TGGTTGGATC AGCTCTTGGT GCTGGAGTCT GCTTTCCCCT TGGTTGGATA 
CAGTTGAAGC TGGCAGAGAA AGCCAATCTT GAGATGGCAA GTTCGAAACC 
AACAGATTTG GTGGAGGAAC AAGGTAATCA AAGCGGCGTT GGTGCCGCTA 
TAGAACGACT TGGGCGCAGC CTAAAGAAGT AAAAATTTGG ACCATCGAAG 
GACCTTTTTT TTTCTCATAA TCTGTGTGCG TTCCTGAAGA CCGCAGGAGG 
AACCTGTTTC ATGGGCTGCA CTACTTCAAT TTTTTCTTCT TTCATGTGCC 
TCACGCTGTA GTGCTGTCAA ACTTTGAAGC AGTAACAGCA AGGGCCACAC 
GGAGCCTCCG TTGTGGGGGA AAAAAGAGCA TTTTTGATAA AAATATCGTA 
TTCGTTGGAT GTG

Gene models with high sequence identity

AT5G63000.1 [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
E-value: 5e-66; Score: 248.00

InterPro Scan Digest

See the detailed result >

AT5G63000.1

Model type: Protein coding
Short Description: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Computational Description: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); Has 40 Blast hits to 40 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR