K15646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15646

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15646

Determination of introduced cDNA(s)

  • J023082B09 - Rice Full-length cDNAs - Original: J023082B09

    full reading [+] show sequence

    Nucleotide sequence: J023082B09 - full reading
    GGCACGCACA TGCTGCGCCC CCACTCCAGT GGAGGAGTAC TCCACTAGGC 
    GGCCACTCCT GTTGACGCCG AGTATAAACA AAACCCAAAA GCGGCGAGAG
    CAACCAAAGC CCAAGTTTGT GGGGGGCAAT AGCTCCCGTC GTCTCTCGCC
    GTCTCGTCAC ACGAGGAGGA AGAGGTCGAT CGATCGATCG AGATGGGGTC
    AGAGGCGGCG GCGGCGAGGC CGGTGGTGGT GACGGTGAAC GGGGAGAGGT
    ACGAGGCGGT GGGGGTCGAC CCGTCGACGA CGCTGCTCGA GTTCCTCCGC
    ACGCGGACCC CCGTCCGGGG CCCCAAGCTC GGCTGCGGCG AAGGTGGATG
    CGGCGCATGC GTGGTCGTCG TTTCCAAGTA CGACGCCGTC GCCGACGAGG
    TGACCGAGTT CTCGGCGAGC TCCTGCCTGA CGCTGCTCGG CAGCCTGCAC
    CACTGCGCGG TCACCACCAG CGAGGGCATC GGCAACTCCA GGGATGGCTT
    CCACGCCGTG CAGCGGCGGC TCTCCGGCTT CCACGCCTCG CAGTGCGGCT
    TCTGCACCCC GGGCATGTGC ATGTCCATCT ACTCCGCGCT CGCCAAGGCC
    GACAGGTGCT CGTCCCGTCC CTCGCCGCCG CCGGGGTTCT CCAAGCTCAC
    CGCCGCTGAG GCCGAGAAGG CCGTCTCCGG CAACCTGTGC CGCTGCACCG
    GCTACAGGCC CATCGTCGAC GCGTGCAAGA GCTTCGCCGC CGACGTCGAC
    CTCGAGGACC TTGGCCTCAA CGCCTTCTGG AAGAAAGGCG CCGACGACGA
    GCGCGCTGAC GTCGGCAAGC TGCCTGCATA CTCTGGTGGC GCCGCCGTCT
    GTACGTTCCC GGAGTTCCTC AAGTCGGAGA TAAGGTCATC CATGGGTCAA
    GCGAATGGTG GCGCTCCGGC GGTGGCGGTC ACCGGAGACG GCTGGTTCCA
    CCCCAAGAGC GTCGAGGAGT TCCACAGGTT GTTTGACTCT AACCTGTTCG
    ACGAAAGGTC TGTGAAGATT GTGGCATCGA ACACCGGCTC CGGAGTGTAC
    AAGGATCAAG ACCTCCATGA CAAGTACATC AACATCTCGC AGATTCTGGA
    ACTCTCAGCC ATCAATAGAA GCAGCAAGGG CGTCGAGATC GGAGCTGTCG
    TGTCTATCTC CAAAGCCATT GAGATATTGT CGGATGGAGG CGCAGTGTTC
    AGAAAGATTG CCGATCACCT GAGCAAAGTG GCCTCGTCGT TCGTCCAGAA
    CACGGCGACC ATTGGAGGCA ACATCATCAT GGCGCAGAGG CTGTCTTTCC
    CGTCGGACAT CGCAACGGTT CTTCTCGCTG CAGGATCAAC TGTCACCATC
    CAGGTGGCCG CCAAGAGGAT GTGCATCACT CTGGAGGAGT TCTTGAAGCA
    GCCTCCATGT GATTCCAGGA CGTTGTTGGT CAGCATCTCT ATCCCGGATT
    GGGGTTCAGA TGATGGCATC ACCTTTGAGT CGTTTCGTGC GGCTCCTCGT
    CCACTTGGCA ATGCTGTGTC ATATGTTAAT TCTGCATTCT TGGCAAGAAG
    TTCAGTGGAT GGATCATCAG GGAGCCATCT CATTGAGGAT GTTTGCTTGG
    CATTTGGCGC CTTCGGGGCC GAACACGCCA TCAGAGCTAG GGAGGTTGAG
    GAGTTCTTGA AGGGAAAATT GGTTAGTGCA CCAGTGATAC TTGAAGCAGT
    TCGGCTTCTT AAAGGTGTTG TTTCACCAGC TGAAGGCACA ACACATCCTG
    AATACAGAGT CAGCTTGGCC GTCAGTTATC TGTTCAGATT CCTGACTTCC
    CTTGCTAATG GCTTGGATGA GCCTGAAAAT GCTAATGTTC CCAATGGTTC
    ATGTACTAAT GGAACCGCAA ACGGTAGCGC TAATTCCTCT CCGGAGAAGC
    ACTCAAATGT TGACAGCTCT GATTTGCCAA TAAAATCAAG GCAAGAGATG
    GTTTTCTCTG ATGAATACAA ACCTGTTGGA AAGCCGATCG AGAAAACCGG
    AGCAGAGCTC CAAGCTTCTG GAGAGGCAGT GTATGTTGAT GACATCCCTG
    CTCCGAAGGA TTGCCTCTAT GGAGCATTTA TCTATAGCAC ACACCCTCAC
    GCTCACATAA AAGATATAAA CTTCAGATCA TCTTTGGCTT CACAGAAGGT
    CATCACAGTT ATCACTGCAA AGGACATTCC TACCGGTGGA GAAAATATTG
    GATCATGCTT CCCAATGCTT GGAGATGAAG CGCTTTTTCG TTCATCCTGT
    TTCTGAATTT GCCGGCCAGA ATATTGGTGT TGTGATTGCT GAAACACAAA
    AGTATGCCTA TATGGCGGCG AAGCAAGCTG TGATCGAATA TAGTACCGAA
    AATCTTCAGC CACCAATTCT GACAATAGAA GATGCTGTCC AGCATAACAG
    CTACTTCCCA GTTCCCCCAT TTTTAGCTCC TACGCCAATT GGTGACTTCA
    ACCAAGCTAT GTCTGAAGCT GATCACAAGA TCATAGATGG GGAGGTGAAA
    CTTGAATCCC AGTACTATTT CTACATGGAG ACACAGACGG CCTTAGCTAT
    CCCTGATGAA GATAACTGTA TAACCCTCTA TGTGTCGGCG CAACTACCTG
    AGATTACTCA AAATACTGTT GCGAGGTGCC TTGGCATTCC ATATCACAAT
    GTCCGTATCA TCACGAGAAG AGTTGGAGGA GGTTTTGGTG GAAAGGCAAT
    GAAAGCAATA CATGTTGCCG CTGCATGTGC TGTCGCCGCA TTCAAGCTGC
    GGCGTCCGGT TCGAATGTAC CTCGATCGCA AGACAGACAT GATCATGGCG
    GGAGGGCGGC ATCCGATGAA GGTAAAGTAC TCCGTCGGTT TCAAGTCCGA
    CGGCAAGATC ACGGGTCTGC ACTTTGATCT TGGAATGAAC GGCGGAATAT
    CGCCGGATTG CAGCCCGGTG TTGCCAGTCG CCATTGTCGG GGCTCTGAAG
    AAGTACAACT GGGGCGCTCT CTCCTTCGAC ATCAAGGTCT GCAAGACGAA
    CGTCTCGTCG AAGTCGGCGA TGCGGGCTCC CGGCGACGCG CAGGGCTCGT
    TCATCGCCGA GGCCATCGTC GAACACATCG CGTCCACTCT CTCAGTGGAC
    ACGAACGCCA TCAGGAGGAA GAACCTCCAC GACTTCGAGA GCCTCAAGGT
    GTTTTATGGG AATAGCGCCG GTGATCCTTC GACGTACAGT CTCGTCACCA
    TCTTCGACAA GCTGGCCTCG TCGCCGGAGT ACCAGCAGAG GGCCGCCATG
    GTCGAGCACT TCAACGCCGG CAACAGGTGG AAGAAGCGGG GCATTTCTTG
    CGTGCCGATC ACCTACGACG TGAGGCTCCG GCCAACTCCG GGGAAGGTGT
    CCATCATGAA CGACGGCTCC ATCGCCGTTG AGGTCGGCGG CGTCGAGATC
    GGGCAGGGGC TGTGGACGAA AGTGAAGCAG ATGACAGCGT TCGCGCTGGG
    CCAGCTCTGC GATGATGGCG GCGAGGGCCT CATCGACAAG GTCCGTGTCA
    TCCAGGCCGA CACCCTGAGC ATGATCCAGG GAGGCTTCAC CGGTGGGAGC
    ACGACCTCCG AGACTAGCTG CGAGGCTGTT CGGAAGTCGT GCGCCGCCCT
    CGTGGAGAGG TTGAAGCCCA TCAAAGAGAA GGCTGGCACG CCACCATGGA
    AATCCCTTAT TGCCCAGGCA AGCATGGCGA GTGTGAAGCT GACAGAGCAC
    GCGTACTGGA CGCCTGACCC CACGTTCACT AGCTACTTGA ACTATGGAGC
    TGCAATTAGT GAGGTGGAAG TCGATGTGCT GACGGGAGAA ACCACCATCC
    TGAGGAGCGA CCTCGTGTAC GACTGTGGGC AGAGCCTGAA TCCTGCTGTG
    GACTTGGGCC AGGTGGAAGG CGCATTCGTG CAAGGGATCG GCTTCTTCAC
    GAACGAGGAG TACACGACCA ACTCCGATGG GCTGGTCATC AACGACGGCA
    CGTGGACGTA CAAGATCCCC ACCGTGGACA CCATCCCCAA GCAGTTCAAC
    GTCGAGCTCA TCAACAGCGC CCGCGATCAC AAGCGCGTCC TCTCCTCCAA
    AGCGTCCGGT GAGCCGCCGC TGCTGCTGGC GTCGTCGGTG CACTGCGCGA
    TGAGGGAGGC GATCAGGGCG GCCAGGAAGG AGTTCGCCGG CGCCGGAGGC
    TCGCCGCTGA CGTTCCAGAT GGACGTGCCG GCGACGATGC CGATCGTCAA
    GGAGCTCTGC GGCCTTGACG TCGTGGAGAG ATATCTCGAG AGCTTTGCTG
    CCAAAGCCTA GAGATAGAAG GGTTCTTTGG CTTAGCTTTG TATAAACACC
    AACAATAATC TGCGCCTGGA TTTGTGTTGA TGTGGTATAT ATGTACAGAA
    CAAAAGGTGT TTTTTTGGGA AAAATAAAAT CATATGGATG GTATTGTTCT
    ATCATGTCTC ATGGAGTCAT GCTATCCAAA TG

    Gene models with high sequence identity

    1. AT2G27150.2 [+] show detail - abscisic aldehyde oxidase 3
      E-value: 0; Score: 570.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Molybdopterin dehydrogenase, FAD-binding 2.7e-38
    HMMPfam [2Fe-2S]-binding 5.3e-22
    HMMPfam CO dehydrogenase flavoprotein, C-terminal 6.9e-20
    HMMPfam Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1.8e-19
    HMMPfam Ferredoxin 1.6e-08
    HMMPfam Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding 7.8e-180
    HMMPfam Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1e-06
    PatternScan 2Fe-2S ferredoxin, iron-sulphur binding site 0
    HMMPanther ALDEHYDE OXIDASE 0
    HMMPanther XANTHINE DEHYDROGENASE 0
    HMMPanther ALDEHYDE OXIDASE 0
    HMMPanther XANTHINE DEHYDROGENASE 0
    superfamily FAD-binding, type 2 2.2e-39
    superfamily [2Fe-2S]-binding 4.7e-35
    superfamily Ferredoxin 5.9e-26
    superfamily Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 3.8e-24
    superfamily CO dehydrogenase flavoprotein, C-terminal 1.4e-17
    superfamily Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding 9.3e-168
    superfamily Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 2.2e-08
    ProfileScan Ferredoxin 10.081
    ProfileScan FAD-binding, type 2 19.557
    Gene3D Beta-grasp fold, ferredoxin-type 3.7e-28
    Gene3D no description 3.6e-28
    Gene3D CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 2.7e-19
    Gene3D CO dehydrogenase flavoprotein, C-terminal 1.1e-07
    Gene3D Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1.6e-16
    Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding 6.8e-29
    Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding 5.9e-51

    See the detailed result >

    AT2G27150.2

    Model type
    Protein coding
    Short Description
    abscisic aldehyde oxidase 3
    Curator Summary
    Encodes the aldehyde oxidase delta isoform catalyzing the final step in abscisic acid biosynthesis.
    Computational Description
    abscisic aldehyde oxidase 3 (AAO3); CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: aldehyde oxidase 4 (TAIR:AT1G04580.1); Has 18285 Blast hits to 17524 proteins in 1277 species: Archae - 409; Bacteria - 10745; Metazoa - 1018; Fungi - 113; Plants - 280; Viruses - 0; Other Eukaryotes - 5720 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J023100F02 - Rice Full-length cDNAs - Original: J023100F02

    full reading [+] show sequence

    Nucleotide sequence: J023100F02 - full reading
    GATTCCCCTT CCTCATCTCC GCCTCGCCTC CACCGGCCGT GATCTCGCCG 
    CCGGCGCCGC CCCGCCGCCC CTGAGGCCTA CTAGTAGCGA CCTACAAGTA
    CCCTGTTTTG TACCATCCTA GGAGCGAATC CTCCCCCTGC GGCAGCGGTA
    GCAGATCGCG ATGGCCGCCT CGGCGCCTCC TCCGGCGGCG ACGAATCCAC
    CGGCTTCGAC CGCGCCCACG GAGGACGGGG AGGTGGAGGA GGGTGCCACG
    CCACCGAGAA CTTCTGCGTT GGGGACGGCG AACTGGGGTA CCGCCACCCT
    CGTCGGCGTC TTCGCCGGGC TGCTCTACGG CGGGAGCAAG GAGGCCAGCG
    CCTCTGTCAG CAAAGACGCT GAAGTGATGT TGAAGATGGG GAGCACCACA
    GACAAGCGTG AGCAGTATAG ATTGATGAGA GATGCAATGG AGAAAAGATT
    CATCCGGGTT GCCAAAGGAT CGCTAGTTGG TGGTGTTCGC CTTGGGATGT
    TTACTGCAAC TTTCTTTGGC ATACAGAACC TTCTTATTGA GAAACGTGGG
    GTGCATGATG TATTTAATAT AGCTGGAGCT GGCTCGGCTA CTGCAGCTGC
    ATTTGGACTT ATATTGCCAG GTTCACCAAT GTGGCGTGCA AGGAATGTAT
    TGGTTGGATC AGCTCTTGGT GCTGGAGTCT GCTTTCCCCT TGGTTGGATA
    CAGTTGAAGC TGGCAGAGAA AGCCAATCTT GAGATGGCAA GTTCGAAACC
    AACAGATTTG GTGGAGGAAC AAGGTAATCA AAGCGGCGTT GGTGCCGCTA
    TAGAACGACT TGGGCGCAGC CTAAAGAAGT AAAAATTTGG ACCATCGAAG
    GACCTTTTTT TTTCTCATAA TCTGTGTGCG TTCCTGAAGA CCGCAGGAGG
    AACCTGTTTC ATGGGCTGCA CTACTTCAAT TTTTTCTTCT TTCATGTGCC
    TCACGCTGTA GTGCTGTCAA ACTTTGAAGC AGTAACAGCA AGGGCCACAC
    GGAGCCTCCG TTGTGGGGGA AAAAAGAGCA TTTTTGATAA AAATATCGTA
    TTCGTTGGAT GTG

    Gene models with high sequence identity

    1. AT5G63000.1 [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
      E-value: 5e-66; Score: 248.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G63000.1

    Model type
    Protein coding
    Short Description
    Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
    Computational Description
    Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); Has 40 Blast hits to 40 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR