K15650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15650

Determination of introduced cDNA(s)

  • J013157G11 - Rice Full-length cDNAs - Original: J013157G11

    full reading [+] show sequence

    Nucleotide sequence: J013157G11 - full reading 
    GTGCAAAAAA TAATATCAGT GTCACTCCTG AGTTATGAAC ATGGCAATAA 
    ATTGCGTACT TGTTTTCTTA TCTTGCAAGG TACCATACAA CTGTGGCTTC 
    TAATCAAGGT GGAGCTGGAT TTGGGGGAAG CTATTCACCT CAAGATAACA 
    GTTCAGAGGC TCTGAAAACA GACTCCAACT GCAAGGTGAA GTCAAATTCA 
    GATGCTGCTG AAATAAAGCA AGGCTCCAAT GGTAGTAGCA ACAACAATGA 
    CATGGGCTCC AGTACTAAGA ATGCCATCAC AAAACCTTCT TCAAACAGGG 
    GAAAAGTGAT ATCACCATCA GCTGTCAAAG CTACCCAACA TACATCAGCA 
    TTCCATCCTG TGCAGCGTCA AACGTCACCT GCTAATGTTG TAGGGAAAGA 
    CAAAGTTGAT GAAGGAATTG CTAATGGAGT TAATGTGGGC CACCCTGTAG 
    ATGTACAAAA TAGCTTTATG CAGCACCATC ATCATGTTCA TTACTACGTC 
    CATGTTATGA CACAGCAGCA GCAGCAGCCA TCCATTGAGC GAGGATCATC 
    AGATGCTCAG TGTGGTTCAT CCAATGTATT TGATCCTCCC ATTGAAGGTC 
    ATGCGGCAAA CTATAGTGTG AACGGGAGCT TTTCAGGTGG CCATAATGGA 
    AACAATGGGC AAAGAGGACC TAGTACTGCT CCCAATGTTG GGAGGCCAAA 
    CATGGAGACT GTTAATGGTA TCGTGGATGA AAATGGGGCT GGAGGTGGCA 
    ATGGAAGTGG GAGCGGTAGT GGTAATGACT TGTATCAGAA TGGGGTCTGT 
    TACCGAGAAG CTGCATTGAA CAAATTCAGA CAGAAACGGA AAGTGAGGAA 
    CTTTGGAAAA AAGGTGCGCT ATCAGAGCAG AAAGAGGTTG GCTGAGCAGC 
    GCCCTCGGAT CCGCGGGCAA TTCGTGCGAC AATCTGGACA GGAAGATCAG 
    GCAGGCCAAG ACGAAGACAG ATAACTAAGA ACCACCTACA TATCCAACAT 
    GGCATCTGCT TTGACAGCTG GAGAGCTACG CAATTCATTC CATAGCTGAA 
    AGCAGCTCAT CGATCCCCAC ATTGGAGTGC TCAATAAATA AAACCCATAT 
    GATTATTTTC TGTGCCTGAC TCCAGATGAA ATTTGTGCTA TGGAGTGGAC 
    CACGCATTTA ATTTTAATAT GGCAATCGGT AACAACTTAG ATGCGATGGT 
    TATTTGTGAC CTCCAGTTCC CTTGCAGAGA TCCACTTGGA CACTTTGTCG 
    AGTCTAAGGA GGAGCAAACC ATCTGACGTT TCTATCGGAT CATGAATGCT 
    AAATCTTTAC TCTACTACTA CATCGAGCTG ACATCAGTGA GGGTTCAACT 
    ATTCATTGCG AGACATTATT TTCAAGTCAA ATAGTACATA CTTTTCTGCT 
    GGCTGC

    Gene models with high sequence identity

    1. AT5G02810.1 [+] show detail - pseudo-response regulator 7
      E-value: 2e-20; Score: 97.80

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan CCT domain 15.537
    HMMPfam CCT domain 7.3e-18

    See the detailed result >

    AT5G02810.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 7
    Curator Summary
    PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 7 (PRR7); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR