K15733

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15733

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15733

Determination of introduced cDNA(s)

  • J033035E16 - Rice Full-length cDNAs - Original: J033035E16

    full reading [+] show sequence

    Nucleotide sequence: J033035E16 - full reading
    GTCACTGCAG AGCAAAGAGA GACCCGTCGC TTTCCCGGCG GCAAAATGGA 
    TTGCCACCTT CTTCCTCCTC CGCTTCCTGC TTTGATCCGG TCTCGACCAA
    CGACCTAGCT AAGCGAGGCG AAAACCAGCA GAAGAGCCTC TCCTCTTCTT
    CGATCGTCGC AAGAAGATAC TACCAGAGAA GCAGATCGCA GCGAGAGGAG
    AAAGATCAAA GATGGACGAT ATCATGAACA AGCTGGGGGG CTACTGGCTC
    GGGCAGAAGG CCAACAAGGA GATCTCCTCC GCCGGCGACG ACATCGAGTC
    GCTGTCGGCG AGCGTCGGGG AGGGGGCAAA GTGGCTGGTG AACAAGCTGA
    AGGGGAAGAT GCAGAAGCCG CTGCAGGAGC TGCTCCGGGA GCACGACCTG
    CCGGAGGGCT TGTTCCCGCG GGAGGCGACC AACTACGAGT TCTCGCCGGA
    GACGCGGCGG CTGACGGTGC ACATCCCGGC GGCGTGCGAG GTCGGCTACA
    GGGACGGCTC CGTGCTGCGG TTCGACGCCA CGGTGTGCGG GACGCTGGAG
    AAGGGGAGGC TGGCGGAGGT GGAGGGGCTC AAGACCAAGG TGCTCGTCTG
    GGCCAGGGTC ACCGCCGTCA GGGCCGACGC CGCCAAGGTG CACTTCACCG
    CCGGCATCAG GAAGTCGCGC AGCCGTGACG CCTACGAGGT CGTCAGGGGC
    GGCATCATCG TCGAGGAGTT CTAGCATCGC GCGTGCGCCG CCAGCCACGA
    TCGATCAGAG GAAATAATAA TACGTGCTTG TACGATTAGT GTTCGGGATG
    GGTAATTTAC CGCGAATGAC CTTTGTGATT ATAACTGATT ATTAGTAATT
    ATAAAAGCTG GATGTCCATG

    Gene models with high sequence identity

    1. AT5G37070.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 3e-66; Score: 248.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF538 2.1e-24
    Gene3D Protein of unknown function DUF538 5e-42

    See the detailed result >

    AT5G37070.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Computational Description
    Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G08890.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR