K15743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15743

Determination of introduced cDNA(s)

  • J013002P15 - Rice Full-length cDNAs - Original: J013002P15

    full reading [+] show sequence

    Nucleotide sequence: J013002P15 - full reading 
    GACTCTTCCT ACTACAAAAA ACCAAACCAT CACCACAAAA AGCATCAAGG 
    CGAGCTCGAA TCCCGGCGGC GGCGGCGGAG TAGAGCCATG GCGTGCTGCG 
    GCGGCGGAAG GGGGGAGGGG GCGGCGGCGA CGGAGTCGGA GGCGTACCTG 
    GAGGGAGAGG CGGTGAGGGA GGCGCGGGAG CTGGTGGCGG AGCTGTGCCG 
    CCACTTCTAC GGCCAAGGGT GGGTCACCGG AACGGGGGGC AGCATCACCG 
    TCAAGGCCAA CGACCCGGCG CTCCCCCTCG CCGATCAGCT CATCGTCATG 
    TCCCCCTCCG GTGTGCAGAA GGAGAGGATG GTGGCAGAGG ACATGTATGT 
    GCTGTCAGCA GATGGGAAGG TGCTCTCCTC ACCTGTATCA AAGCCATGGC 
    CAAACAAGCC TCCAAAATGT ACTGACTGTG CTCCTCTGTT CATGAAGGCT 
    TATCTGATGA GAGGAGCTGG GGCTGTTATT CATAGCCATG GGATGGAAAC 
    TTGCATTGCA ACCATGCTTG ATCCTGGTGC AAAAGAGTTT AGGATGACAC 
    ATATGGAAAT GATTAAAGGA ATTAAAGGCC ATGGTTACCG TGACGAATTG 
    GTGGTTCCTA TAATTGAGAA CACTCCTTAT GAGTATGAGC TCACTGACTC 
    ACTGGCTGAG GCGATTGCAG CATACCCTAA GGCAACTGCA GTCCTTGTAC 
    GGAACCATGG AATTTATGTA TGGGGTGATT CCTGGATCAA TGCCAAGACA 
    CAGGCTGAAT GCTATCATTA CCTTTTTGAT GCTGCCATCA AGCTCTATCA 
    ATTGGGTATT GATTGGACAA CTCCTGAGCA TGGTCCAATA AACAGTGCCA 
    AAAGACCACG CAGTGTTCTA AGCTCTAGTA TTCCAAATGG ATGCCCTGAT 
    TCCAAATCAT CAAAGCATTG TGTTGTTCTT GACATTGAGG GAACAACTAC 
    TCCAATATCA TTTGTGACTG ATGTGATGTT TCCCTATGCC CGTGATAATG 
    TGCGAAAGCA TCTGACTTCA ACATATAGTT CTGATGAAAC CAAAGAGGAC 
    ATCAAACTAT TGCGCATCCA AGTTGAAGAA GACCTGAAAA ATGGAATTGT 
    TGGGTCTGTT CCAATTCCAC CTGACGATGC TGACAAAGAA GAGGTTATCA 
    ATGCATTAGT TGCTAATGTT GAATCGATGA TTAAAGCAGA CAGGAAGATT 
    ACGTCGTTGA AACAACTCCA GGGCCACATA TGGAGGACTG GTTTTGAAAG 
    TAAAGAACTG CAAGGAGTTG TTTTCGATGA TGTCCCCGAG GCGCTAAAGC 
    ACTGGCATGC TAGTGGCATG AAGGTCTACA TATACTCAAG TGGCAGCCGG 
    GAGGCGCAAA GGCTATTATT TGGCAATACG GCCTATGGTG ATCTGCGACA 
    ATACCTCTGT GGTTTCTTTG ACACCACAAC CGGTAACAAA AGAGAAACAA 
    GGAGCTACTT TGAGATTTCG CAATCACTTG GGGTGGACAG TCCTGCTCAG 
    ATCTTATTTA TCACCGATGT CTTCCAAGAA GCTGTTGCTG CAAAAAGTGC 
    AGGTTTTGAG GTAATAATCT CCATTCGCCC GGGAAATGCT CCGCTCCCTG 
    AGAATCATGG TTTCCGGACT ATCAAGTCGT TTAGTGAGAT CTGAAGAAGG 
    TACGCAAAGA CAATGTCAGG AGTGCTTTGA TGGCGAGCTA CCTAGCATAT 
    GTAAGAACAA TGCAAATAAT AAATGGAAAA TCCGGAATGG TGGCAAAATA 
    AATAAATTTG TAAATGTGGG CATATTGTTG CATTATTGTG CCATCCGTCG 
    ACGGTTTTGT AGCTCTTTTT TAGCAAAGAG GAATAATAAA ATTGTTGTTG 
    CC

    Gene models with high sequence identity

    1. AT5G53850.2 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 0; Score: 726.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Class II aldolase/adducin, N-terminal 3e-36
    Gene3D Class II aldolase/adducin, N-terminal 1e-38
    Gene3D no description 1.6e-07
    HMMPanther PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED 1.4e-113
    HMMPanther PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED 1.4e-113
    HMMTigr Methylthioribulose-1-phosphate dehydratase 9.4e-92
    HMMTigr 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 5.5e-74
    HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 1 0.0011
    superfamily Class II aldolase/adducin, N-terminal 1.2e-41
    superfamily HAD-like 2.3e-19

    See the detailed result >

    AT5G53850.2

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: L-methionine salvage from methylthioadenosine, L-methionine salvage, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (InterPro:IPR010041), Class II aldolase/adducin, N-terminal (InterPro:IPR001303), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR