K15743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15743

Determination of introduced cDNA(s)

  • J013002P15 - Rice Full-length cDNAs - Original: J013002P15

    full reading [+] show sequence

    Nucleotide sequence: J013002P15 - full reading
    GACTCTTCCT ACTACAAAAA ACCAAACCAT CACCACAAAA AGCATCAAGG 
    CGAGCTCGAA TCCCGGCGGC GGCGGCGGAG TAGAGCCATG GCGTGCTGCG
    GCGGCGGAAG GGGGGAGGGG GCGGCGGCGA CGGAGTCGGA GGCGTACCTG
    GAGGGAGAGG CGGTGAGGGA GGCGCGGGAG CTGGTGGCGG AGCTGTGCCG
    CCACTTCTAC GGCCAAGGGT GGGTCACCGG AACGGGGGGC AGCATCACCG
    TCAAGGCCAA CGACCCGGCG CTCCCCCTCG CCGATCAGCT CATCGTCATG
    TCCCCCTCCG GTGTGCAGAA GGAGAGGATG GTGGCAGAGG ACATGTATGT
    GCTGTCAGCA GATGGGAAGG TGCTCTCCTC ACCTGTATCA AAGCCATGGC
    CAAACAAGCC TCCAAAATGT ACTGACTGTG CTCCTCTGTT CATGAAGGCT
    TATCTGATGA GAGGAGCTGG GGCTGTTATT CATAGCCATG GGATGGAAAC
    TTGCATTGCA ACCATGCTTG ATCCTGGTGC AAAAGAGTTT AGGATGACAC
    ATATGGAAAT GATTAAAGGA ATTAAAGGCC ATGGTTACCG TGACGAATTG
    GTGGTTCCTA TAATTGAGAA CACTCCTTAT GAGTATGAGC TCACTGACTC
    ACTGGCTGAG GCGATTGCAG CATACCCTAA GGCAACTGCA GTCCTTGTAC
    GGAACCATGG AATTTATGTA TGGGGTGATT CCTGGATCAA TGCCAAGACA
    CAGGCTGAAT GCTATCATTA CCTTTTTGAT GCTGCCATCA AGCTCTATCA
    ATTGGGTATT GATTGGACAA CTCCTGAGCA TGGTCCAATA AACAGTGCCA
    AAAGACCACG CAGTGTTCTA AGCTCTAGTA TTCCAAATGG ATGCCCTGAT
    TCCAAATCAT CAAAGCATTG TGTTGTTCTT GACATTGAGG GAACAACTAC
    TCCAATATCA TTTGTGACTG ATGTGATGTT TCCCTATGCC CGTGATAATG
    TGCGAAAGCA TCTGACTTCA ACATATAGTT CTGATGAAAC CAAAGAGGAC
    ATCAAACTAT TGCGCATCCA AGTTGAAGAA GACCTGAAAA ATGGAATTGT
    TGGGTCTGTT CCAATTCCAC CTGACGATGC TGACAAAGAA GAGGTTATCA
    ATGCATTAGT TGCTAATGTT GAATCGATGA TTAAAGCAGA CAGGAAGATT
    ACGTCGTTGA AACAACTCCA GGGCCACATA TGGAGGACTG GTTTTGAAAG
    TAAAGAACTG CAAGGAGTTG TTTTCGATGA TGTCCCCGAG GCGCTAAAGC
    ACTGGCATGC TAGTGGCATG AAGGTCTACA TATACTCAAG TGGCAGCCGG
    GAGGCGCAAA GGCTATTATT TGGCAATACG GCCTATGGTG ATCTGCGACA
    ATACCTCTGT GGTTTCTTTG ACACCACAAC CGGTAACAAA AGAGAAACAA
    GGAGCTACTT TGAGATTTCG CAATCACTTG GGGTGGACAG TCCTGCTCAG
    ATCTTATTTA TCACCGATGT CTTCCAAGAA GCTGTTGCTG CAAAAAGTGC
    AGGTTTTGAG GTAATAATCT CCATTCGCCC GGGAAATGCT CCGCTCCCTG
    AGAATCATGG TTTCCGGACT ATCAAGTCGT TTAGTGAGAT CTGAAGAAGG
    TACGCAAAGA CAATGTCAGG AGTGCTTTGA TGGCGAGCTA CCTAGCATAT
    GTAAGAACAA TGCAAATAAT AAATGGAAAA TCCGGAATGG TGGCAAAATA
    AATAAATTTG TAAATGTGGG CATATTGTTG CATTATTGTG CCATCCGTCG
    ACGGTTTTGT AGCTCTTTTT TAGCAAAGAG GAATAATAAA ATTGTTGTTG
    CC

    Gene models with high sequence identity

    1. AT5G53850.2 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 0; Score: 726.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Class II aldolase/adducin, N-terminal 3e-36
    Gene3D Class II aldolase/adducin, N-terminal 1e-38
    Gene3D no description 1.6e-07
    HMMPanther PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED 1.4e-113
    HMMPanther PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED 1.4e-113
    HMMTigr Methylthioribulose-1-phosphate dehydratase 9.4e-92
    HMMTigr 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 5.5e-74
    HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 1 0.0011
    superfamily Class II aldolase/adducin, N-terminal 1.2e-41
    superfamily HAD-like 2.3e-19

    See the detailed result >

    AT5G53850.2

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: L-methionine salvage from methylthioadenosine, L-methionine salvage, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (InterPro:IPR010041), Class II aldolase/adducin, N-terminal (InterPro:IPR001303), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR