K15750

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15750

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
T2 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15750

Determination of introduced cDNA(s)

  • J033005C22 - Rice Full-length cDNAs - Original: J033005C22

    full reading [+] show sequence

    Nucleotide sequence: J033005C22 - full reading 
    GACTCTCCTC CCCCTCGTAT CGCTCGGGAG CGGAGGTCTC CTCGCCCCTA 
    GAGCGCCGCC GCCACCGCCA CCGCCGCGGC CGCCGCGGCG GGGACTTGCC 
    GGTGCCAAGT CCACACGCCA TCGTCGCTCG CACCCTTCCC GCGCAGGGAT 
    TTGTTCACGA TGGCCCGCTT GTATGTTGGC AACTTGGATC CCCGAGTGAC 
    TTCCGGGGAA CTTGAAGATG AGTTTCGTGT GTTTGGAGTT CTGCGAAGTG 
    TCTGGGTTGC CCGTAAACCA CCTGGTTTTG CATTTATCGA TTTTGATGAC 
    AAGAGGGATG CTGAGGATGC ACTCCGTGAT TTAGATGGCA AGAATGGATG 
    GAGAGTTGAG CTCTCACGGA ACTCAAGTAG CCGCGGAGGT CGTGATCGAC 
    ATGGTGGGTC TGAGATGAAG TGCTATGAGT GTGGTGAAAC TGGGCACTTT 
    GCTCGTGAAT GTCGTTTGCG TATTGGTCCT GGAGGTCTGG GTAGTGGAAA 
    GCGTCGTAGC AGGAGTCGCA GCCGCAGTCG CAGCCCTCAA TACCGCAAGA 
    GCCCGACCTA TGGTAGAAGA AGCTACAGTC CTCGTGATCG CTCTCCAAGG 
    CGCCGCAGTG TTTCACCAGT TCGTGGGCGC AGCTACAGCA GGTCACCACG 
    TGGCCGAGGT GGTTCTCCTT ATGCTGATGG AAGAGATGGT GGCAGGTACC 
    GCCGTAGCAG GAGCTAGACC CTGATGCCTG TGCTTGACCG TCTGCTCTTT 
    GGCTTGCATG TCATGAATGC TTTAAGACTG GCATCAACTG ATTGACTTCA 
    ATTAAGGTTT ACTACTTTAT CTGCCTTGAT ATTTCAGCCT CTTATTTCTG 
    ACGTTAAAAA ACTTATGGGA TGGATGTAAT ATGCAACTAA GACATATTAC 
    CTTTCTACT

    Gene models with high sequence identity

    1. AT4G31580.2 [+] show detail - serine/arginine-rich 22
      E-value: 9e-34; Score: 140.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 15.596
    ProfileScan Zinc finger, CCHC-type 10.823
    superfamily RNA-binding domain, RBD 1.6e-15
    HMMPanther ARGININE/SERINE-RICH SPLICING FACTOR 2.6e-29
    HMMPfam RNA recognition motif, RNP-1 3.4e-15
    HMMPfam Zinc finger, CCHC-type 3.5e-07
    Gene3D Nucleotide-binding, alpha-beta plait 6.4e-13
    HMMSmart RNA recognition motif, RNP-1 2.7e-16
    HMMSmart Zinc finger, CCHC-type 0.00011

    See the detailed result >

    AT4G31580.2

    Model type
    Protein coding
    Short Description
    serine/arginine-rich 22
    Curator Summary
    Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.
    Computational Description
    serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033092J19 - Rice Full-length cDNAs - Original: J033092J19

    full reading [+] show sequence

    Nucleotide sequence: J033092J19 - full reading 
    GGGGAGAGCG AGGCACAGCT ACCGGCGGCG CAGCCACACA GCAGCAGCAG 
    GTGAGGAGGA GAGGAGACCC GCCGCCGCCG CCGCCATGGG TATCTCGCGT 
    GATTCCATGC ACAAGCGCCG CGCCACGGGC GGCAAGCAGA AGGCATGGCG 
    CAAGAAGCGA AAGTATGAGC TCGGAAGGCA GCCTGCCAAC ACCAAGCTGT 
    CAAGCAACAA GACAGTGAGG AGGGTGCGTG TCCGTGGAGG TAATGTGAAA 
    TGGAGGGCCC TCCGTTTGGA TACTGGCAAC TACTCATGGG GAAGTGAGGC 
    CGTGACCCGC AAGACCCGTA TCCTTGATGT GGTCTACAAT GCATCCAACA 
    ATGAGCTTGT CAGGACTCAG ACCCTTGTAA AGAGTGCTAT TGTGCAAGTT 
    GATGCTGCCC CCTTCAAGCA GTGGTACCTC ACTCACGATG GAGTGGATAT 
    TGGTAGAAAG AAGAAGGCTC CTGCAGCCAA GAAGGATGCT GAGGGGCAGG 
    ATGCTGAAGC TACCACAGAG GAAGCGAAGA AAAGCAACCA TGTTGTCAGG 
    AAGCTTGAGA AGCGCCAACA GGGACGCACA CTTGACGCCC ACATCGAAGA 
    ACAGTTTGGC AGTGGGAGGT TGCTGGCCTG CATTTCTTCC CGCCCTGGGC 
    AGTGTGGCCG AGCAGATGGC TATATCCTTG AGGGCAAAGA GCTGGAATTC 
    TACATGAAGA AGCTCCAGAG GAAGAAGGGC AAGGGTGCCT CAGCTTAGAG 
    CAAGTCTTTC TTTGTTGCTG GTTCTACACT GAAAGAACTA CCCTTTTTTG 
    TTCCCTGAGA GCTCCTATGT TATGTTTGCA GACGCATAGC TGTTTTTTTA 
    GGATTAAACA ACTTTAGCAT GATGACATGA GAATGGGTTA TGTACTCTGG 
    ATGTTATTAA GTTAAAATAT TTACTTTCTG CCAGCTCGTT

    Gene models with high sequence identity

    1. AT5G59240.1 [+] show detail - Ribosomal protein S8e family protein
      E-value: 5e-89; Score: 324.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S8e 9.3e-57
    PatternScan Ribosomal protein S8e, conserved site 0
    HMMPfam Ribosomal protein S8e/ribosomal biogenesis NSA2= 1.2e-51
    Coil coiled-coil 0
    HMMPanther 40S RIBOSOMAL PROTEIN S8 1.2e-152
    HMMPanther 40S RIBOSOMAL PROTEIN S8 1.2e-152

    See the detailed result >

    AT5G59240.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S8e family protein
    Computational Description
    Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013070M10 - Rice Full-length cDNAs - Original: J013070M10

    full reading [+] show sequence

    Nucleotide sequence: J013070M10 - full reading 
    GATACAGCCT AGAACAACTG CTTGCCAAAA AAGGAAAAGA AAAGAAAACA 
    CTTAGTGCAG AAACTGGGAA TTGCAATGGC GGGAGCAAGA TCCGTTGGTT 
    CTCTCCCAGT GCCTAATGTG CAGGCGCTTG CAGAAATTTG CAATGATCCA 
    GATGAACACA TACCTGAAAG GTACATCAGA CCAGAGGCTA GTTCTGAGGA 
    GGTCATCAAC AACTACCAAG GTGACATGGC GATTCCGATC ATCGATCTCA 
    AGAAATTGCT TTGTCCGCAA TCATCAGAAG AGGAGTGTGT GAAGCTGAGA 
    TCTGCCTGCC AGTATTGGGG GTTCTTTCTG CTCATTAACC ATGGAGTGCC 
    AGATGAAGTG ATTGCAAACC TGAAGAGAGA CATTGTTGAT TTCTTTAGCC 
    AGCCACTGGA CACCAAGAAG GAGTACACAC AGCTACCGAA TAGCCTAGAA 
    GGCTATGGAC AGAGCTTTGT TTTCTCTGAG GACCAGAAAC TTGACTGGGC 
    AGACATGCTG TATCTTCATG TCCATCCTAG CGATTCAAGG GACCTAAGGT 
    TCTGGCCCAC TTCTCCAGCA TCTTTCAGGC AATCCATTGA TGCATACTCA 
    TCAGAGACTA AAAGCCTGGC ACTCTGCTTG TTTGAGTTCA TGGCTAAGGC 
    TGTGGGCGCT AAGCCAGAGT CACTTTTAGA TTTATTTGAA GAGCAGCCTC 
    GAGGCTTAAG GATGGCCTAT TACCCACCAT GCCGGCAAGC TGACAAGGTG 
    ATGGGCCTTT CGCCACACTC TGATGCGGGT GGCCTGACAC TGCTGCTCGA 
    GATTAACAAT GTGCAGGGCC TGCAGATCAA GAAAGATGGC AAGTGGTTCT 
    CCATAGATGC TCCAAATGGT GCACTTATTG CTAACATTGG CGACACACTT 
    GAGGTAATGA CCAATAACAA ATTATGCTTT CACATGTCGA AGGACCTTGA 
    TGTATTTGGA TGAGTTCAAT AAAAGCTCCT ATTATCTAGA AAACTTGTCA 
    AAGCACCAAA CAAAATACCT AAGTTCAAAT TATTTATATT CTTGAGTC

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 8e-67; Score: 251.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 2.4e-13
    superfamily Clavaminate synthase-like 2.4e-71
    Gene3D no description 8.7e-71
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 7.4e-144
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 7.4e-144

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR