K15750

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	whole plant flowering stage (PO:0007016)	late (PATO:0000693) (Adult plant::Flowering::late)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	dark green (PATO:0001249) (Stem::Color::dark)
T2	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15750

Determination of introduced cDNA(s)

J033005C22 - Rice Full-length cDNAs - Original: J033005C22

full reading [+] show sequence

GACTCTCCTC CCCCTCGTAT CGCTCGGGAG CGGAGGTCTC CTCGCCCCTA 
GAGCGCCGCC GCCACCGCCA CCGCCGCGGC CGCCGCGGCG GGGACTTGCC 
GGTGCCAAGT CCACACGCCA TCGTCGCTCG CACCCTTCCC GCGCAGGGAT 
TTGTTCACGA TGGCCCGCTT GTATGTTGGC AACTTGGATC CCCGAGTGAC 
TTCCGGGGAA CTTGAAGATG AGTTTCGTGT GTTTGGAGTT CTGCGAAGTG 
TCTGGGTTGC CCGTAAACCA CCTGGTTTTG CATTTATCGA TTTTGATGAC 
AAGAGGGATG CTGAGGATGC ACTCCGTGAT TTAGATGGCA AGAATGGATG 
GAGAGTTGAG CTCTCACGGA ACTCAAGTAG CCGCGGAGGT CGTGATCGAC 
ATGGTGGGTC TGAGATGAAG TGCTATGAGT GTGGTGAAAC TGGGCACTTT 
GCTCGTGAAT GTCGTTTGCG TATTGGTCCT GGAGGTCTGG GTAGTGGAAA 
GCGTCGTAGC AGGAGTCGCA GCCGCAGTCG CAGCCCTCAA TACCGCAAGA 
GCCCGACCTA TGGTAGAAGA AGCTACAGTC CTCGTGATCG CTCTCCAAGG 
CGCCGCAGTG TTTCACCAGT TCGTGGGCGC AGCTACAGCA GGTCACCACG 
TGGCCGAGGT GGTTCTCCTT ATGCTGATGG AAGAGATGGT GGCAGGTACC 
GCCGTAGCAG GAGCTAGACC CTGATGCCTG TGCTTGACCG TCTGCTCTTT 
GGCTTGCATG TCATGAATGC TTTAAGACTG GCATCAACTG ATTGACTTCA 
ATTAAGGTTT ACTACTTTAT CTGCCTTGAT ATTTCAGCCT CTTATTTCTG 
ACGTTAAAAA ACTTATGGGA TGGATGTAAT ATGCAACTAA GACATATTAC 
CTTTCTACT

Gene models with high sequence identity

AT4G31580.2 [+] show detail - serine/arginine-rich 22
E-value: 9e-34; Score: 140.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	RNA recognition motif, RNP-1	15.596
ProfileScan	Zinc finger, CCHC-type	10.823
superfamily	RNA-binding domain, RBD	0.0000000000000016
HMMPanther	ARGININE/SERINE-RICH SPLICING FACTOR	2.6e-29
HMMPfam	RNA recognition motif, RNP-1	0.0000000000000034
HMMPfam	Zinc finger, CCHC-type	0.00000035
Gene3D	Nucleotide-binding, alpha-beta plait	0.00000000000064
HMMSmart	RNA recognition motif, RNP-1	2.7e-16
HMMSmart	Zinc finger, CCHC-type	0.00011

See the detailed result >

AT4G31580.2

Model type: Protein coding
Short Description: serine/arginine-rich 22
Curator Summary: Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.
Computational Description: serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033092J19 - Rice Full-length cDNAs - Original: J033092J19

full reading [+] show sequence

GGGGAGAGCG AGGCACAGCT ACCGGCGGCG CAGCCACACA GCAGCAGCAG 
GTGAGGAGGA GAGGAGACCC GCCGCCGCCG CCGCCATGGG TATCTCGCGT 
GATTCCATGC ACAAGCGCCG CGCCACGGGC GGCAAGCAGA AGGCATGGCG 
CAAGAAGCGA AAGTATGAGC TCGGAAGGCA GCCTGCCAAC ACCAAGCTGT 
CAAGCAACAA GACAGTGAGG AGGGTGCGTG TCCGTGGAGG TAATGTGAAA 
TGGAGGGCCC TCCGTTTGGA TACTGGCAAC TACTCATGGG GAAGTGAGGC 
CGTGACCCGC AAGACCCGTA TCCTTGATGT GGTCTACAAT GCATCCAACA 
ATGAGCTTGT CAGGACTCAG ACCCTTGTAA AGAGTGCTAT TGTGCAAGTT 
GATGCTGCCC CCTTCAAGCA GTGGTACCTC ACTCACGATG GAGTGGATAT 
TGGTAGAAAG AAGAAGGCTC CTGCAGCCAA GAAGGATGCT GAGGGGCAGG 
ATGCTGAAGC TACCACAGAG GAAGCGAAGA AAAGCAACCA TGTTGTCAGG 
AAGCTTGAGA AGCGCCAACA GGGACGCACA CTTGACGCCC ACATCGAAGA 
ACAGTTTGGC AGTGGGAGGT TGCTGGCCTG CATTTCTTCC CGCCCTGGGC 
AGTGTGGCCG AGCAGATGGC TATATCCTTG AGGGCAAAGA GCTGGAATTC 
TACATGAAGA AGCTCCAGAG GAAGAAGGGC AAGGGTGCCT CAGCTTAGAG 
CAAGTCTTTC TTTGTTGCTG GTTCTACACT GAAAGAACTA CCCTTTTTTG 
TTCCCTGAGA GCTCCTATGT TATGTTTGCA GACGCATAGC TGTTTTTTTA 
GGATTAAACA ACTTTAGCAT GATGACATGA GAATGGGTTA TGTACTCTGG 
ATGTTATTAA GTTAAAATAT TTACTTTCTG CCAGCTCGTT

Gene models with high sequence identity

AT5G59240.1 [+] show detail - Ribosomal protein S8e family protein
E-value: 5e-89; Score: 324.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Ribosomal protein S8e	9.3e-57
PatternScan	Ribosomal protein S8e, conserved site	0
HMMPfam	Ribosomal protein S8e/ribosomal biogenesis NSA2=	1.2e-51
Coil	coiled-coil	0
HMMPanther	40S RIBOSOMAL PROTEIN S8	1.2e-152
HMMPanther	40S RIBOSOMAL PROTEIN S8	1.2e-152

See the detailed result >

AT5G59240.1

Model type: Protein coding
Short Description: Ribosomal protein S8e family protein
Computational Description: Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013070M10 - Rice Full-length cDNAs - Original: J013070M10

full reading [+] show sequence

GATACAGCCT AGAACAACTG CTTGCCAAAA AAGGAAAAGA AAAGAAAACA 
CTTAGTGCAG AAACTGGGAA TTGCAATGGC GGGAGCAAGA TCCGTTGGTT 
CTCTCCCAGT GCCTAATGTG CAGGCGCTTG CAGAAATTTG CAATGATCCA 
GATGAACACA TACCTGAAAG GTACATCAGA CCAGAGGCTA GTTCTGAGGA 
GGTCATCAAC AACTACCAAG GTGACATGGC GATTCCGATC ATCGATCTCA 
AGAAATTGCT TTGTCCGCAA TCATCAGAAG AGGAGTGTGT GAAGCTGAGA 
TCTGCCTGCC AGTATTGGGG GTTCTTTCTG CTCATTAACC ATGGAGTGCC 
AGATGAAGTG ATTGCAAACC TGAAGAGAGA CATTGTTGAT TTCTTTAGCC 
AGCCACTGGA CACCAAGAAG GAGTACACAC AGCTACCGAA TAGCCTAGAA 
GGCTATGGAC AGAGCTTTGT TTTCTCTGAG GACCAGAAAC TTGACTGGGC 
AGACATGCTG TATCTTCATG TCCATCCTAG CGATTCAAGG GACCTAAGGT 
TCTGGCCCAC TTCTCCAGCA TCTTTCAGGC AATCCATTGA TGCATACTCA 
TCAGAGACTA AAAGCCTGGC ACTCTGCTTG TTTGAGTTCA TGGCTAAGGC 
TGTGGGCGCT AAGCCAGAGT CACTTTTAGA TTTATTTGAA GAGCAGCCTC 
GAGGCTTAAG GATGGCCTAT TACCCACCAT GCCGGCAAGC TGACAAGGTG 
ATGGGCCTTT CGCCACACTC TGATGCGGGT GGCCTGACAC TGCTGCTCGA 
GATTAACAAT GTGCAGGGCC TGCAGATCAA GAAAGATGGC AAGTGGTTCT 
CCATAGATGC TCCAAATGGT GCACTTATTG CTAACATTGG CGACACACTT 
GAGGTAATGA CCAATAACAA ATTATGCTTT CACATGTCGA AGGACCTTGA 
TGTATTTGGA TGAGTTCAAT AAAAGCTCCT ATTATCTAGA AAACTTGTCA 
AAGCACCAAA CAAAATACCT AAGTTCAAAT TATTTATATT CTTGAGTC

Gene models with high sequence identity

AT1G17020.1 [+] show detail - senescence-related gene 1
E-value: 8e-67; Score: 251.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oxoglutarate/iron-dependent oxygenase	0.00000000000024
superfamily	Clavaminate synthase-like	2.4e-71
Gene3D	no description	8.7e-71
HMMPanther	ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE	7.4e-144
HMMPanther	IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL	7.4e-144

See the detailed result >

AT1G17020.1

Model type: Protein coding
Short Description: senescence-related gene 1
Curator Summary: Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
Computational Description: senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
Link: InterPro Scan - TAIR