K15809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15809

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15809

Determination of introduced cDNA(s)

J023006E09 - Rice Full-length cDNAs - Original: J023006E09

full reading [+] show sequence

GGCCTGATCC ATCGGAGGAG GACGACGAGG AGGAGGTTTG CGAGGCAGCG 
GCAGGGAGAG GAAGATGTCT TCGCTGCGGA ACGCGATCCA GCGGCGCGCT 
CACAAGGAGC GCGCCCAGCC GGAGTCGAGG AAGAAGTTCG GGCTTCTGGA 
GAAGCACAAG GACTACATCG TTCGGGCGAA GGCTTTCCAC CAGAAGGAGG 
AAACCATCAG GAAATTGAAG GAGAAGGCAT CATTTAGAAA CCCTGATGAG 
TTCTATTTTA AGATGATCAA CAGCAAGACT GTTGATGGAA TTCATAGGCC 
TAAGCCTGAA GCAAACAAGT ATACTGAAGA TGAACTCATG CTGCTAAAAA 
CTAAAGATAT GGGATACATC CTTCAGGGTA TTCAGAGTGA AAAGAAGAAA 
ATTGAAAAAT TAAGCTCCAT GCTTCATGAA CTAGACAACA AGCGACCAAA 
CAAGCATGTT TACTTTGCTG AAGACAGAGA AGAGGTCAAA GAAATACAAT 
CTAGAATAGA ACAAAAGAGC AGTTCACTTG GTTTGGACAA CATCCCTTCC 
CGTATAAAGA GGAAAACTGC TTCGTCCTAT AGGGAGTTAG AGGAGAGGAA 
ACAGAGGGTT CAAAAGCTTG AGAAACTGTA TGCAGACATG GCCTTGCAGA 
AAGAGTTGAA GAAACCTGGA CGGAAAAGAA AACTCCGTGA GGATGAGATT 
GAGAATCAAA CATCCCGGCC TGTTTATAAG TGGCGAGCAC AACGGAAGCG 
ATGATGTGAA TGGCTTACAA TGGAATCATT GAGAATATAT GGAGTAACCA 
GTAGATCCTA AAGCAAACGG AGACTATTGT TTATTTTCTT GAATTCTGAT 
GCATTTACAT GTAGCAGTGC CCCTCCACAA CCGTCTCTCT TCATAGCCTT 
CACTTGATTG TATTTGTGGA TCCATGTTGG ATACCACTTT CTGCTACCTG 
CTACTGATGT GATGTACCTC TGCTTTTTAC AAAATGTTGG GTAACTACAT 
CAACAATTGA GAACCTAAAC GGTCCGAATC TTCACGCATC GTCCGTAATC 
AACATTCCAA GGTTAGCAAG CACAGTGCCA CCAGAATTAG GGCGTGTTCA 
CTTTGCCGGA AAAAAAACAT ACCATTTGAT GGTAGAGCCA AATATTAGTA 
ATGCCATTCT TTGGTAAAGT CAAAATATCA ATGTGTCATT GGCTTTGATA 
CCTTACTAAA TTTTGGTGTA ATTTTTGTGA GTGGAAGGTT CCGGAATTAC 
CAAATTACCT TACTAAATTT TGGTGTAATT TTTGTGAGTG CAATCCTATT 
TGTTTGTTAC CCTACCAACA AAAATTTGAC AATACCAAAA TTTAGTAAGG 
TTTATTCTGG TAGTGGAGTG AACAAGCCAC TCTTTAGTGT ATGAAGTATT 
TGATATATTC TCCAGAAAAA AAGGGGTTAT GCACAGC

Gene models with high sequence identity

AT3G60360.1 [+] show detail - embryo sac development arrest 14
E-value: 5e-77; Score: 285.00

InterPro Scan Digest

Program	Description	E-value
HMMPIR	Small-subunit processome, Utp11	3.3e-83
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	Small-subunit processome, Utp11	1.1e-75
HMMPfam	Small-subunit processome, Utp11	1.3e-61

See the detailed result >

AT3G60360.1

Model type: Protein coding
Short Description: embryo sac development arrest 14
Computational Description: EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Link: InterPro Scan - TAIR