K15834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15834

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15834

Determination of introduced cDNA(s)

  • J023037P17 - Rice Full-length cDNAs - Original: J023037P17

    full reading [+] show sequence

    Nucleotide sequence: J023037P17 - full reading 
    GAGTTGGCGA GCCCGAGGAG CGGAGGCGGC CACAAGTCTA ATCCGCGTCG 
    TCTGCGCGTT CGTGGGCGAG GAGGAGAAAG AAGAGGAGGA AGAGAGGGAA 
    GGGGGCTTGA TTTGATTTGG GCGCGTCTCG TGGAGTATCC GGTTGCCCCT 
    TCTAGTGTGT AACTTGGAGC AAATTTGGAC CCTGAGACGC AAATCAGTCA 
    TGGCTGGTTC TCTTGCGGCG TCTGCATTCT TCCCTGTCCC AGGGTCTTCC 
    CCTGCAGCTT CGGCTAGAAG CTCTAAGAAC ACAACCGGTG AATTGCCAGA 
    GAATTTGAGT GTCCGCGGAA TCGTCGCGAA GCCTAATCCG TCTCCAGGGG 
    CCATGCAAGT CAAGGCGCAG GCGCAAGCCC TTCCTAAGGT TAATGGAACC 
    AAGGTTAACC TGAAGACTAC AAGCCCAGAC AAGGAGGATA TAATACCGTA 
    CACTGCTCCG AAGACATTCT ATAACCAATT GCCAGACTGG AGCATGCTTC 
    TTGCAGCTGT CACGACCATT TTCCTGGCAG CTGAGAAGCA GTGGACTCTG 
    CTTGACTGGA AGCCGAAGAA GCCTGACATG CTGGCTGACA CATTCGGCTT 
    TGGTAGGATC ATCCAAGACG GGCTGGTGTT TAGGCAAAAC TTCTTGATTC 
    GGTCCTACGA GATTGGTGCT GATCGTACAG CTTCTATTGA GACATTAATG 
    AATCATTTAC AGGAAACAGC TCTGAACCAT GTGAAAACTG CTGGTCTCTT 
    AGGTGATGGT TTTGGTGCTA CGCCGGAGAT GAGCAAACGG AACTTAATAT 
    GGGTTGTCAG CAAAATTCAG CTTCTTGTTG AGCGATACCC ATCATGGGGA 
    GATATGGTCC AAGTTGACAC ATGGGTAGCT GCTGCTGGCA AAAATGGCAT 
    GCGTCGAGAT TGGCATGTTC GGGACTACAA CTCTGGTCAA ACAATCTTGA 
    GGGCTACAAG TGTTTGGGTG ATGATGAATA AGAACACTAG AAGACTTTCA 
    AAAATGCCAG ATGAAGTTAG AGCTGAAATA GGCCCGTATT TCAATGGCCG 
    TTCTGCTATA TCAGAGGAGC AGGGTGAAAA GTTGCCTAAG CCAGGGACCA 
    CATTTGATGG CGCTGCTACC AAACAATTCA CAAGAAAAGG GCTTACTCCG 
    AAGTGGAGTG ACCTTGATGT CAACCAGCAT GTGAACAATG TGAAGTATAT 
    TGGTTGGATA CTTGAGAGTG CTCCAATTTC GATACTGGAG AAGCACGAGC 
    TTGCAAGCAT GACCTTGGAT TACAGGAAGG AGTGTGGCCG TGACAGTGTG 
    CTTCAGTCGC TTACCGCTGT TTCAGGTGAA TGCGATGATG GCAACACAGA 
    ATCCTCCATC CAGTGTGACC ATCTGCTTCA GCTGGAGTCC GGAGCAGACA 
    TTGTGAAGGC TCACACAGAG TGGCGACCGA AGCGAGCTCA GGGCGAGGGG 
    AACATGGGCT TTTTCCCAGC TGAGAGTGCA TGAGCGCTTC TGTAGTTTAT 
    CCGGCAAGTA ACCTCTTTGA GAAGTGCAGA TTCTAACTTG GCTAGCAACA 
    CAGGACAAAT GATTGTTGGT GGGAAATTTG GCATGCCGAG CCTGGGTTTT 
    GTGATGCACA CAGCACACAT TCAGATTTGA AGATTGAGAG ATGCTTCTTA 
    TTGGCAGCTT GTTCAGAAAG ATGACTAAGC GGTTTGGGAT AAAATCAGCT 
    GATTGGGAAA CATTAGCAGG ATGATAAGCA TGACTGGTGG TACCAATGAA 
    AAGGGTTGAA ATCCTTTGCA TTGTTCATTT GTTGTGGAGC AAGAGTGGCC 
    GCAGTTGCTT ATCACACAGG ATGATGGAGG TGTTTGTGTG AAGCTTATTG 
    CTGAAGCTGG ATTGTTTTTG ACCTGTGTTT CTAAAAGAAA AGGGAAAAGA 
    AGAAGCTGTG GATTGAGGCC GGAGCAGCAG AGATATTACA ATCGACATAG 
    ATAAATAAGA TGTAATACTA ATTTAGCCCA GGTGGTTTGT GTGTGGAGAT 
    GCAATCCATT GTAGTAACAG CCTAACTTGT ACATTCTTGC CATCTTTTTC 
    TTATTAATTG AATGAATGAA TCGCAGACCT CCTGCGTTTT CATCAATAAT 
    TG

    Gene models with high sequence identity

    1. AT1G08510.1 [+] show detail - fatty acyl-ACP thioesterases B
      E-value: 8e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioesterase/thiol ester dehydrase-isomerase 2.1e-23
    superfamily Thioesterase/thiol ester dehydrase-isomerase 0.000000000034
    HMMPfam Acyl-ACP thioesterase 4.6e-102
    HMMPfam Acyl-ATP thioesterase, N-terminal domain 2.1e-54
    Gene3D no description 0.000003

    See the detailed result >

    AT1G08510.1

    Model type
    Protein coding
    Short Description
    fatty acyl-ACP thioesterases B
    Curator Summary
    Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer.
    Computational Description
    fatty acyl-ACP thioesterases B (FATB); CONTAINS InterPro DOMAIN/s: Acyl-ACP-thioesterase, N-terminal domain (InterPro:IPR021113), Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: fatA acyl-ACP thioesterase (TAIR:AT3G25110.1); Has 1275 Blast hits to 1274 proteins in 533 species: Archae - 0; Bacteria - 944; Metazoa - 0; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR