K15841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15841

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15841

Determination of introduced cDNA(s)

  • J033050D14 - Rice Full-length cDNAs - Original: J033050D14

    full reading [+] show sequence

    Nucleotide sequence: J033050D14 - full reading 
    GGCTTGTTCC CTCTCTCTCT CCTCTTATCC TTCTCTTCTC CGTTTGCTTC 
    GCTGCTGCTG CTGCTGTTCT ACGCGCGCGA CACGGAAGAG AGAAAAGTGG 
    TTTTTTATTG GGTTCCTAAG CCCTTTTTGT TTCCAGAGGC TTCTGGATTG 
    ATCGGTTGAT CTCTCTCCCT TCCCCTCTAG GGTTTCCTGG GGGTGGATCT 
    GAGGAGCGGC GGCGCTCCTT CGTCCCGGTT TATGTAAATC TGATCGATCC 
    AGAAAGTTTG TGAAAAAAGA GTGTGGCACA TACCTAAAGC TGGCTTAAAG 
    TTTGCCCATA GCTAATATCA TGGGCGCTCT TTGTGATTTC TGCGGGGAGC 
    AGAGGTCTAT GGTTTATTGC CGATCAGATG CAGCATCCTT GTGCTTATCG 
    TGTGACCGTA ATGTGCATTC AGCTAATGCT CTTTCTCGGC GCCATACAAG 
    GACACTTCTG TGTGATAGAT GTGCTTCACA GCCTGCCATG GTCCGCTGCC 
    TTGTAGAAAA TGCCTCGCTT TGCCAAAATT GTGATTGGAA TGGGCATAGT 
    GCTGGGTCTT CAGCTGCTGG TCATAAGAGG CAGACCATAA ACTGCTACTC 
    AGGGTGCCCA TCATCTTCAG AACTTTCAAA AATCTGGACA TTTGTTTCGG 
    ATATTCCTAA TGTAGCTCCT GAGCCGAATT GCGAGCAAGG GATAAGCATG 
    ATGAGCATCA GCGACAGTGG TGTCAGTAAT CAAGACAATG CTGCAGGGGA 
    CAGCAGTTTG TTAGATATTG CTAGTGCAAC CCTTATGAGT GATCTTGGCA 
    CTGCTGGCAA GCCAAAGTCT TTGATAGGCT CCTCATCTGA AGCTGGCGTG 
    AACCTTCTTC CACTTGCTAC TGATCAGATG GCTGGATCCG TGGATTCGAC 
    ATCAGCTAAG GTGCCCTATA CGGCAGACCA AGATATGTTC AGCAAAGACA 
    GTATATATGA AGATTTCTGT GTGGACGATG TTGATCTTAG TTTCGAAAAT 
    TATGAGGAAC TATTTGGCAC CTCCCATATT CAAACAGAGC AACTGTTTGA 
    TGATGCTGGG ATCGACAGTT ACTTTGAATC GAAGGAAATA CCTTCTGGAA 
    ACTCTGATGA GCCCAAGCTG ATGCAGCCAG TGACCAGCAA TGCAGTATCT 
    GCTGATTCAG GGATGTCGAT CCCAGGAGCC AAAGGTGATT CCAGTCTTTG 
    TATACCTGTG AGGCAAGCTA GGTCCAGTAT CTCTCTTTCA TTTTCTGGTT 
    TGACTGGTGA GAGCAGTGCT GGAGATTACC AAGATTGTGG GGTATCACCA 
    GTGCTCCTTA TGGGTGAGCC TCCTTGGCAT CCTCCTGGCC CTGAGGGGTC 
    ATTTGCTGGA GCTACCAGAG ACGGTGCTAT CACACGATAC AAGGAGAAGA 
    AGAAGAGAAG AAAATTTGAC AAGAAAATCA GGTATGCATC TCGCAAGGCT 
    AGGGCAGATG TGAGAAAAAG AGTCAAGGGC CGGTTTGTTA AGGCTGGTGA 
    AGCATACGAC TACGATCCAC TCTGTGAAAC GAGGAGCTAC TGAACACAAT 
    AAAACATTAT CCAAGTGTTA GGTTAGCAAG CATCAACCAA TGCTTGTTGT 
    GGCTGGCAGG AAGGCACTCA TACTACAAAC AATGTGGCAG GCCTGCCTCT 
    AAAAACAACA AAAAAAACAG AGCAATCAAG GGGACAAAAA GGACAAAAAG 
    ATTTGAATTT GGGAAATTTT TCAGATGCTA CCCCCTCCTT TTTCTTCTGT 
    ACAGTGGAGG GAATTTGCAT CTTTCTGTTG CTTTCGGGAG GAGCGATTTG 
    AGTCGCTGCC CACCTTTTGT GAATTAATCT TGATACAGCT GAACAAACTT 
    CACTTGCATT TTTATCTCCT TTCTACTAAC CAGAGCATCC ACCTACCCTT 
    GCTGTGGTGT TTTTGGTGGT ATGCTTCCAG ATTGGACTAT TAGCAAGACA 
    AGGATGGATG TAGTCGTGAA ATCTTCTGCT GCTCTATTTA TTGTTATGTA 
    AAATCTGCTG TAATCCGGAG TTTATTCTGC AACTCTGCAT GTGTAAATAC 
    CAGATCAGAA TAAACTGGTA GATGTAAAGT TTTCTTTATT TTCTCAAGTC 
    GATGACATTG GAACCCATGT AACCGGCCAC CAACTTTTTT GTTTCACTAT 
    GCTCAAATAT TCGAAAACTT CAGACTGGCT TAATGCTATT ATTTGTACTA 
    AGC

    Gene models with high sequence identity

    1. AT3G07650.4 [+] show detail - CONSTANS-like 9
      E-value: 2e-77; Score: 287.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, B-box 9.684
    ProfileScan Zinc finger, B-box 8.859
    ProfileScan CCT domain 15.329
    HMMSmart Zinc finger, B-box 2.3e-12
    HMMSmart Zinc finger, B-box 0.27
    HMMPfam CCT domain 3.1e-18
    HMMPfam Zinc finger, B-box 1.7e-05

    See the detailed result >

    AT3G07650.4

    Model type
    Protein coding
    Short Description
    CONSTANS-like 9
    Curator Summary
    This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
    Computational Description
    CONSTANS-like 9 (COL9); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G48250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR