K15841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15841

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15841

Determination of introduced cDNA(s)

  • J033050D14 - Rice Full-length cDNAs - Original: J033050D14

    full reading [+] show sequence

    Nucleotide sequence: J033050D14 - full reading
    GGCTTGTTCC CTCTCTCTCT CCTCTTATCC TTCTCTTCTC CGTTTGCTTC 
    GCTGCTGCTG CTGCTGTTCT ACGCGCGCGA CACGGAAGAG AGAAAAGTGG
    TTTTTTATTG GGTTCCTAAG CCCTTTTTGT TTCCAGAGGC TTCTGGATTG
    ATCGGTTGAT CTCTCTCCCT TCCCCTCTAG GGTTTCCTGG GGGTGGATCT
    GAGGAGCGGC GGCGCTCCTT CGTCCCGGTT TATGTAAATC TGATCGATCC
    AGAAAGTTTG TGAAAAAAGA GTGTGGCACA TACCTAAAGC TGGCTTAAAG
    TTTGCCCATA GCTAATATCA TGGGCGCTCT TTGTGATTTC TGCGGGGAGC
    AGAGGTCTAT GGTTTATTGC CGATCAGATG CAGCATCCTT GTGCTTATCG
    TGTGACCGTA ATGTGCATTC AGCTAATGCT CTTTCTCGGC GCCATACAAG
    GACACTTCTG TGTGATAGAT GTGCTTCACA GCCTGCCATG GTCCGCTGCC
    TTGTAGAAAA TGCCTCGCTT TGCCAAAATT GTGATTGGAA TGGGCATAGT
    GCTGGGTCTT CAGCTGCTGG TCATAAGAGG CAGACCATAA ACTGCTACTC
    AGGGTGCCCA TCATCTTCAG AACTTTCAAA AATCTGGACA TTTGTTTCGG
    ATATTCCTAA TGTAGCTCCT GAGCCGAATT GCGAGCAAGG GATAAGCATG
    ATGAGCATCA GCGACAGTGG TGTCAGTAAT CAAGACAATG CTGCAGGGGA
    CAGCAGTTTG TTAGATATTG CTAGTGCAAC CCTTATGAGT GATCTTGGCA
    CTGCTGGCAA GCCAAAGTCT TTGATAGGCT CCTCATCTGA AGCTGGCGTG
    AACCTTCTTC CACTTGCTAC TGATCAGATG GCTGGATCCG TGGATTCGAC
    ATCAGCTAAG GTGCCCTATA CGGCAGACCA AGATATGTTC AGCAAAGACA
    GTATATATGA AGATTTCTGT GTGGACGATG TTGATCTTAG TTTCGAAAAT
    TATGAGGAAC TATTTGGCAC CTCCCATATT CAAACAGAGC AACTGTTTGA
    TGATGCTGGG ATCGACAGTT ACTTTGAATC GAAGGAAATA CCTTCTGGAA
    ACTCTGATGA GCCCAAGCTG ATGCAGCCAG TGACCAGCAA TGCAGTATCT
    GCTGATTCAG GGATGTCGAT CCCAGGAGCC AAAGGTGATT CCAGTCTTTG
    TATACCTGTG AGGCAAGCTA GGTCCAGTAT CTCTCTTTCA TTTTCTGGTT
    TGACTGGTGA GAGCAGTGCT GGAGATTACC AAGATTGTGG GGTATCACCA
    GTGCTCCTTA TGGGTGAGCC TCCTTGGCAT CCTCCTGGCC CTGAGGGGTC
    ATTTGCTGGA GCTACCAGAG ACGGTGCTAT CACACGATAC AAGGAGAAGA
    AGAAGAGAAG AAAATTTGAC AAGAAAATCA GGTATGCATC TCGCAAGGCT
    AGGGCAGATG TGAGAAAAAG AGTCAAGGGC CGGTTTGTTA AGGCTGGTGA
    AGCATACGAC TACGATCCAC TCTGTGAAAC GAGGAGCTAC TGAACACAAT
    AAAACATTAT CCAAGTGTTA GGTTAGCAAG CATCAACCAA TGCTTGTTGT
    GGCTGGCAGG AAGGCACTCA TACTACAAAC AATGTGGCAG GCCTGCCTCT
    AAAAACAACA AAAAAAACAG AGCAATCAAG GGGACAAAAA GGACAAAAAG
    ATTTGAATTT GGGAAATTTT TCAGATGCTA CCCCCTCCTT TTTCTTCTGT
    ACAGTGGAGG GAATTTGCAT CTTTCTGTTG CTTTCGGGAG GAGCGATTTG
    AGTCGCTGCC CACCTTTTGT GAATTAATCT TGATACAGCT GAACAAACTT
    CACTTGCATT TTTATCTCCT TTCTACTAAC CAGAGCATCC ACCTACCCTT
    GCTGTGGTGT TTTTGGTGGT ATGCTTCCAG ATTGGACTAT TAGCAAGACA
    AGGATGGATG TAGTCGTGAA ATCTTCTGCT GCTCTATTTA TTGTTATGTA
    AAATCTGCTG TAATCCGGAG TTTATTCTGC AACTCTGCAT GTGTAAATAC
    CAGATCAGAA TAAACTGGTA GATGTAAAGT TTTCTTTATT TTCTCAAGTC
    GATGACATTG GAACCCATGT AACCGGCCAC CAACTTTTTT GTTTCACTAT
    GCTCAAATAT TCGAAAACTT CAGACTGGCT TAATGCTATT ATTTGTACTA
    AGC

    Gene models with high sequence identity

    1. AT3G07650.4 [+] show detail - CONSTANS-like 9
      E-value: 2e-77; Score: 287.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, B-box 9.684
    ProfileScan Zinc finger, B-box 8.859
    ProfileScan CCT domain 15.329
    HMMSmart Zinc finger, B-box 2.3e-12
    HMMSmart Zinc finger, B-box 0.27
    HMMPfam CCT domain 3.1e-18
    HMMPfam Zinc finger, B-box 1.7e-05

    See the detailed result >

    AT3G07650.4

    Model type
    Protein coding
    Short Description
    CONSTANS-like 9
    Curator Summary
    This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
    Computational Description
    CONSTANS-like 9 (COL9); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G48250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR