K15915

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15915

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15915

Determination of introduced cDNA(s)

  • J013023H18 - Rice Full-length cDNAs - Original: J013023H18

    full reading [+] show sequence

    Nucleotide sequence: J013023H18 - full reading 
    TTATCTACTT CCTCTACCTC CCCTAATCCA CTCCACTCCA CCGCAGCTTC 
    TCCCGCGGCG AGGCGGCTCA TCCCATCTCC ACAGCCGCAG TTGTTGCAGC 
    AAGGAGGCAT GGCGGTGGGG GGTGAAGAAG AGAAGCCCTT CAACTTCCTC 
    CAGATTCTGT GTGGTGCGTC AACTCCTCCC CTCGTTTGCT TCATCCTCCT 
    CCTCCTCTGC CCATGGATGA GGGCGTCATA GCTGGTGGCA CCGCGGGTGT 
    GGTGGTGGAA ACAGCTCTGT ACCCGATTGA TACGATAAAA ACCAGGCTTC 
    AGGCTGCTCG GGGAGGAAGT CAAATTCAAT GGAAAGGATT GTATTCTGGA 
    TTAGCTGGAA ATATTGCTGG TGTTCTCCCG GCTTCTGCTG TATTTGTGGG 
    AATATACGAA CCGACAAAAA GAAAACTACT GGAGACTTTT CCTGAAAATT 
    TGAGTGCTGT TGCCCATTTT ACTGCCGGGG CTATTGGAGG AATTGCGGCT 
    TCTCTCATTC GCGTCCCCAC AGAGGTTGTC AAACAAAGAA TGCAAACAGG 
    TCAATTCAGG TCTGCACCTG ATGCTGTTCG TCTCATTGTT GGTAAAGAAG 
    GATTCAGAGG TCTTTACGCT GTATGTATCT TCTGACCTCA TATATGGTGG 
    AACCTGTATT TAGCCGATTC AACTCTAATT TTTGTTATCC CTGTATATTT 
    CAGGAAAAAT AATTATTTGA ATCTGTTTAA TATGCCTTTT TAATTGAATT 
    GTTGTTACAA TGGAAAAAAA CTCATTGCCT TCCTTGTCAT ACTGTTTCTT 
    TTTGTTTGTA GGGATATGGA TCATTTTTAC TTCGAGATCT GCCTTTTGAT 
    GCCATTCAAT TCTGTATATA TGAGCAACTT CGAATTGGTT ACAAAGTTGT 
    GGCCAAGAGG GAGCTGAATG ATCCAGAGAA TGCACTTATT GGTGCTTTTG 
    CTGGTGCCAT TACTGGGGCT ATAACAACAC CACTCGATGT GATGAAGACG 
    CGGTTGATGG TTCAGGGATC AGCGAACCAG TACTCCGGAA TTGTAAGCTG 
    CGCCCAGACA ATCCTGAGGG AGGAAGGACC TGGGGCATTC TTGAAGGGGA 
    TCGAGCCGCG GGTGCTGTGG ATTGGCATCG GCGGGTCCAT CTTCTTCGGC 
    GTGCTGGAGA AGACCAAGTC GATGCTCGCC GAGAGGAGGA GCCGCGAGCC 
    ACCAGCCGGG AAGGATGAGT GACAGATTTT ACCCTCGGCC ATGGATGGAT 
    GCTTCAAGTT TTGTGTTTGT TTTGATCGAT TTCACATGAG AAGTAGTGCA 
    TCTCTCGAGG AGGAAGACAA TGCCACTTTG CGTCCCAATG ATTAAATTCC 
    CATTCGTTTA ATGAATTAAT ATTATGTTCA AGTTTTTTTT AAAATCTGAT 
    TATACTACAT TATAGCTTCT CTCTCTCCCT GCAGTTTACC CATGCTGTAT 
    GACTTGTAGA TGTAACAGTC GGTCGTTGCC GATCAAATTG TACCTTTGTC 
    AATCCAGATA GTATTGCAGC AGTATTT

    Gene models with high sequence identity

    1. AT4G39460.2 [+] show detail - S-adenosylmethionine carrier 1
      E-value: 2e-46; Score: 22.30

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 5.9e-30
    superfamily Mitochondrial substrate carrier 2.4e-33
    ProfileScan Mitochondrial substrate/solute carrier 23.8
    ProfileScan Mitochondrial substrate/solute carrier 6.402
    ProfileScan Mitochondrial substrate/solute carrier 13.031
    ProfileScan Mitochondrial substrate/solute carrier 10.135
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN 2.7e-55
    HMMPanther Mitochondrial substrate carrier 2.7e-55
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN 4.7e-56
    HMMPanther Mitochondrial substrate carrier 4.7e-56
    HMMPfam Mitochondrial substrate/solute carrier 1e-23
    HMMPfam Mitochondrial substrate/solute carrier 0.00000015
    HMMPfam Mitochondrial substrate/solute carrier 0.000000000013

    See the detailed result >

    AT4G39460.2

    Model type
    Protein coding
    Short Description
    S-adenosylmethionine carrier 1
    Curator Summary
    Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.
    Computational Description
    S-adenosylmethionine carrier 1 (SAMC1); CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 2 (TAIR:AT1G34065.1).
    Link
    InterPro Scan - TAIR