K15917

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15917

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15917

Determination of introduced cDNA(s)

  • J013128C09 - Rice Full-length cDNAs - Original: J013128C09

    full reading [+] show sequence

    Nucleotide sequence: J013128C09 - full reading 
    GATCGACCAT CACCTCTCCC ACACGGGGCG TACGTGCTAA GCTGCAGCAC 
    AACCCAAAGC CATATATCTC CGATAATGGC GAACTCACCG ACGCTGACAA 
    TGCTGGTGTT CCTAGCTATT GGGCTATCTC TCGTCCTCTC CGCAGCCGGC 
    GTGTCTGTGG AGAGCGTGGT CACCGAGGCG TTCTTCAACG GGATCAAGAA 
    CCAGGCCCCG AACGGCTGCG CCGGTAAGAG CTTCTACACA CGGCAATCGT 
    TCCTGAACGC CGCCCGCTCC TACTCGGGCT TCGCCAATGA CCGCACCAAC 
    GACGACTCCA AGCGCGAGAT CGCTGCCTTC TTCGCGCATG TCACACACGA 
    GACTGGACAT ATGTGCTACA TCAATGAGAT AAATGGGGCA AACATGGACT 
    ATTGTGACAA GAGCAACAAA CAGTGGCCGT GCCAGCCGGG CAAGAAGTAC 
    TACGGACGCG GGCCGCTGCA GATCTCATGG AACTTCAACT ACGGGCCGGC 
    GGGAAAGAAC ATCGGGTTCG ACGGGCTAAG GGACCCAGAC AAGGTGGCGC 
    AGGACCCGAC AATCTCTTTC AAGACGGCGC TCTGGTTCTG GATGAACAAC 
    GTGCACCAGG TGATGTCGCA GGGGTTTGGC GCCACCATCC GGGCCATCAA 
    CGGTGCGCTC GAGTGCAACG GGAAGAACCC CGGTGCCGTC AACGCAAGGG 
    TAAACTACTA CAAGGACTAC TGCCGCCAGT TCGGCGTCAG CCCGGGGGGC 
    AACCTCTACT GTTGAGTTGC ATGCACACGC TGCTCGGCTC ATCGTGATCG 
    ACTGAATAAT GAACAGAGTA ATAATAATGA ATAAAACGTT TGGTGCGTAC 
    GTACATTGCA TACGTGCACG GTACGTACAT GCTGGAAGCT AAGTGACGTC 
    AAAGAGTTTA GTACTAAAAA GTGATCTTTC TATTCGATGT TACTCTATCT 
    TAGGGCGGAG TAAGTATAAA TGTGTAATAA GAAATAAAAT GTTAGGATCG 
    CGGGATCGAA AGATGAGTAA ACATGTGTAC CGGTGGACCA CTTAAATAAT 
    TATTTCTCC

    Gene models with high sequence identity

    1. AT3G54420.1 [+] show detail - homolog of carrot EP3-3 chitinase
      E-value: 8e-82; Score: 300.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CLASS IV CHITINASE 8.2e-86
    HMMPanther Glycoside hydrolase, family 19, catalytic 8.2e-86
    PatternScan Glycoside hydrolase, family 19, catalytic 0
    PatternScan Glycoside hydrolase, family 19, catalytic 0
    Gene3D no description 6.3e-59
    HMMPfam Glycoside hydrolase, family 19, catalytic 9.3e-77
    superfamily Lysozyme-like 8.8e-87
    HMMPIR Glycoside hydrolase, family 19 7.4e-141

    See the detailed result >

    AT3G54420.1

    Model type
    Protein coding
    Short Description
    homolog of carrot EP3-3 chitinase
    Curator Summary
    encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.
    Computational Description
    homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR