K15918

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15918

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15918

Determination of introduced cDNA(s)

  • J023093H07 - Rice Full-length cDNAs - Original: J023093H07

    full reading [+] show sequence

    Nucleotide sequence: J023093H07 - full reading
    GATCGAAGTA GTAGCATACT ACTCTCTACT CCTCTCCTCT CCTCTCCTCC 
    GCTTTGGTTT GCTCCGATCT GCAGCGAGAG CGGGAGGTCG TCGCCGGCGA
    GGAGGCGCGG CGGAGGAATC CTCTCCTTCC CGATCCCGTC CGGTGCTTCC
    TCTTCTTGGT CTGCGAGTAA AGCTCGGCCG CCGCCGGCGA CGAACTGGTT
    TGGGGAGAGC CACGTACGGC GCCACCTCGA ATCGAATCGA ATTGGAGGTT
    GATTTGACTC GTTGGTTGGA GCGCTCCATC GATTAAGCAG ACGGAGTCAT
    GCTTCTTCTT TGGGTATAAA AGTTTGGATC TCGGAGGCTC GATTCAATCT
    CTGGAGTGGG AACAATCGTT TGCTCGTGGT CGTGGGATAG CTCCTCTGCG
    AGATGCAGAG TGGGAGCGAG ATGAGACCCG TGCACAACAG TGTCGACACG
    GTGAACGCGG CTGCTGTTGC CATTGTTACA GCCGAGAGCC GCACGCAACC
    TCAGGCAGAG CCGCGAAGAA AATGGGCTGA TTGGTTGAGT GTGTACTTCT
    GCTTTGGATC ACAGAAAAAT GGCCGACGCA TCAGCCATGC TGTTCTTGTC
    CCAGAACCTT TACCTCCGAG GACAGATGCA CCTATGCCAG AAATTCCAAT
    CCATCCGCCA CCCCCGGTAT TCCCCTTTGT CGCACCTCCA TCCTCTCCTG
    CTTCTTTTCT CCAATCAGGA GGTGCATCTA TTGTACAATC ACCTGTTGGT
    GCTCCATCTT TTTCGCCTCT CTCGCCAAAT TCTCCATCCC CCACTGGGCC
    ACCGTCCATC TTTGCTATCG GACCATATGC ACATGAGACA CAGCTAGTCT
    CTCCTCCTGT CTTCTCAGCC TTCACAACTG AACCTTCAAC AGCTCCTTTC
    ACTCCCCCAC CAGAGTCTGT GCATCTGACA ACCCCTTCCT CACCAGAGGT
    GCCATATGCA AAGCTACTTA CCTCAATCAA CAACAGCAAA AATGCTGAAA
    CAGGTGAGCT TCAGTCATAC CAGATTTACC CTGAGAGCCC AATAGGACGT
    CTGATATCTC CAAGCTCAGC TTGTTCAGGG ACTTGCTCTC CATTTCCTGA
    CCCTGAGGTG CAGACTTCCT CACGTTCCAC ATTCCCCTCA TTCCCAGTTC
    GTGAGCCTCC AAAGATACTG GATGGCGAGG GAATTGCAAC ACAGAAGTTG
    ATACCTCGCC ATATGCGCAA TGGCGGTTCT CTCTTGGATG GACATATTTC
    TGCTGCTGTA CCAGTCGTAG ACTTCTCTGC CCGACTTCAA AATAATGATC
    ATGCTATGGA TCATCGGGTT TCATTTGAGT TAACAGTAGA AGATGTAGCT
    CGCTGTCTTG AGAAGAAAAC CAACATTAAT GGGGAGTCTG CTGCAGCTTC
    TTTTCGCCTT GTGCCCACCG GTAACGGAGA TCACATTCAT CCCAGAGAAT
    CGAATGATAC AAGAGCAGGG CTATGTGTTG ATGAAACATA CCATGATCTG
    CCTGAGAAAG CACGGCGCTC CTTGTCCCTT CGTAAGGCTA AAGAATTCAA
    GTTCAACAAT GTTGATGCTC CTAGTGTGGA GCCGAGCGTT GGATCAGACT
    GGTGGGCAAA CGAGAAAGTT GCTGGGATCA CATCAGAGCC AAGGAAAAGC
    TGGTCCTTCT TCCCAGTGGC ACAGCCAGGG GTCAGCTAAC AGCTGCACTG
    ACCATAATCT TACAAGATGA AGAAATAAGC TTCTGTCATT TTTGCTCCTG
    CTGTTTCTCA GTTCCCCAGA TACCATCATC ATAACTGCAG GAGATGCAAA
    CTTATGCAAA ATATTCCAGT TTTAGCGGTA AGTTGGAGTT AGTTAGTAAC
    TCAGTGTCCA GCTAATATCA TCATAAGATA CTAAAGGTGA TGCAGATTCT
    GGAACCTGTT GTTATAAAAC CATAATACTT CCATGGTGTA GCGTCTGTTG
    TATCCTCCTT AACTGACTGG CTGTTCTGAT ACTGATGCTG TTTATGTACA
    TAATAAACTA GCGAAAAGAG TAGAACTCTT CCTAGCAGCA GTGTATTGTC
    AGAGTGGAGC AAGCAAATGA CTCTGATCCC CTCTTCAATT AGTTGTGCTT
    TGGCTTTGGC AGAAGAAACT TGAAAATATT GTTCTGTCGT GCTTACCAGT
    TCGGCAAGAA TTTCAATTCT GTCTTGGCAT ATGTGATGTC ACATCTCTTA
    TCACAAATTC TGTAAGCAAC ACTATTTTGT TGTGCTCTGT ATATTAAATT
    GGGCCAAGTG CTGACTGTTT ATATTTGAAT GTTTGATTAC CCATGGTCAT
    TCTG

    Gene models with high sequence identity

    1. AT4G25620.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 4e-58; Score: 223.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G25620.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Computational Description
    hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 940 Blast hits to 722 proteins in 169 species: Archae - 0; Bacteria - 80; Metazoa - 158; Fungi - 130; Plants - 239; Viruses - 59; Other Eukaryotes - 274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR