K15918

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15918

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15918

Determination of introduced cDNA(s)

  • J023093H07 - Rice Full-length cDNAs - Original: J023093H07

    full reading [+] show sequence

    Nucleotide sequence: J023093H07 - full reading 
    GATCGAAGTA GTAGCATACT ACTCTCTACT CCTCTCCTCT CCTCTCCTCC 
    GCTTTGGTTT GCTCCGATCT GCAGCGAGAG CGGGAGGTCG TCGCCGGCGA 
    GGAGGCGCGG CGGAGGAATC CTCTCCTTCC CGATCCCGTC CGGTGCTTCC 
    TCTTCTTGGT CTGCGAGTAA AGCTCGGCCG CCGCCGGCGA CGAACTGGTT 
    TGGGGAGAGC CACGTACGGC GCCACCTCGA ATCGAATCGA ATTGGAGGTT 
    GATTTGACTC GTTGGTTGGA GCGCTCCATC GATTAAGCAG ACGGAGTCAT 
    GCTTCTTCTT TGGGTATAAA AGTTTGGATC TCGGAGGCTC GATTCAATCT 
    CTGGAGTGGG AACAATCGTT TGCTCGTGGT CGTGGGATAG CTCCTCTGCG 
    AGATGCAGAG TGGGAGCGAG ATGAGACCCG TGCACAACAG TGTCGACACG 
    GTGAACGCGG CTGCTGTTGC CATTGTTACA GCCGAGAGCC GCACGCAACC 
    TCAGGCAGAG CCGCGAAGAA AATGGGCTGA TTGGTTGAGT GTGTACTTCT 
    GCTTTGGATC ACAGAAAAAT GGCCGACGCA TCAGCCATGC TGTTCTTGTC 
    CCAGAACCTT TACCTCCGAG GACAGATGCA CCTATGCCAG AAATTCCAAT 
    CCATCCGCCA CCCCCGGTAT TCCCCTTTGT CGCACCTCCA TCCTCTCCTG 
    CTTCTTTTCT CCAATCAGGA GGTGCATCTA TTGTACAATC ACCTGTTGGT 
    GCTCCATCTT TTTCGCCTCT CTCGCCAAAT TCTCCATCCC CCACTGGGCC 
    ACCGTCCATC TTTGCTATCG GACCATATGC ACATGAGACA CAGCTAGTCT 
    CTCCTCCTGT CTTCTCAGCC TTCACAACTG AACCTTCAAC AGCTCCTTTC 
    ACTCCCCCAC CAGAGTCTGT GCATCTGACA ACCCCTTCCT CACCAGAGGT 
    GCCATATGCA AAGCTACTTA CCTCAATCAA CAACAGCAAA AATGCTGAAA 
    CAGGTGAGCT TCAGTCATAC CAGATTTACC CTGAGAGCCC AATAGGACGT 
    CTGATATCTC CAAGCTCAGC TTGTTCAGGG ACTTGCTCTC CATTTCCTGA 
    CCCTGAGGTG CAGACTTCCT CACGTTCCAC ATTCCCCTCA TTCCCAGTTC 
    GTGAGCCTCC AAAGATACTG GATGGCGAGG GAATTGCAAC ACAGAAGTTG 
    ATACCTCGCC ATATGCGCAA TGGCGGTTCT CTCTTGGATG GACATATTTC 
    TGCTGCTGTA CCAGTCGTAG ACTTCTCTGC CCGACTTCAA AATAATGATC 
    ATGCTATGGA TCATCGGGTT TCATTTGAGT TAACAGTAGA AGATGTAGCT 
    CGCTGTCTTG AGAAGAAAAC CAACATTAAT GGGGAGTCTG CTGCAGCTTC 
    TTTTCGCCTT GTGCCCACCG GTAACGGAGA TCACATTCAT CCCAGAGAAT 
    CGAATGATAC AAGAGCAGGG CTATGTGTTG ATGAAACATA CCATGATCTG 
    CCTGAGAAAG CACGGCGCTC CTTGTCCCTT CGTAAGGCTA AAGAATTCAA 
    GTTCAACAAT GTTGATGCTC CTAGTGTGGA GCCGAGCGTT GGATCAGACT 
    GGTGGGCAAA CGAGAAAGTT GCTGGGATCA CATCAGAGCC AAGGAAAAGC 
    TGGTCCTTCT TCCCAGTGGC ACAGCCAGGG GTCAGCTAAC AGCTGCACTG 
    ACCATAATCT TACAAGATGA AGAAATAAGC TTCTGTCATT TTTGCTCCTG 
    CTGTTTCTCA GTTCCCCAGA TACCATCATC ATAACTGCAG GAGATGCAAA 
    CTTATGCAAA ATATTCCAGT TTTAGCGGTA AGTTGGAGTT AGTTAGTAAC 
    TCAGTGTCCA GCTAATATCA TCATAAGATA CTAAAGGTGA TGCAGATTCT 
    GGAACCTGTT GTTATAAAAC CATAATACTT CCATGGTGTA GCGTCTGTTG 
    TATCCTCCTT AACTGACTGG CTGTTCTGAT ACTGATGCTG TTTATGTACA 
    TAATAAACTA GCGAAAAGAG TAGAACTCTT CCTAGCAGCA GTGTATTGTC 
    AGAGTGGAGC AAGCAAATGA CTCTGATCCC CTCTTCAATT AGTTGTGCTT 
    TGGCTTTGGC AGAAGAAACT TGAAAATATT GTTCTGTCGT GCTTACCAGT 
    TCGGCAAGAA TTTCAATTCT GTCTTGGCAT ATGTGATGTC ACATCTCTTA 
    TCACAAATTC TGTAAGCAAC ACTATTTTGT TGTGCTCTGT ATATTAAATT 
    GGGCCAAGTG CTGACTGTTT ATATTTGAAT GTTTGATTAC CCATGGTCAT 
    TCTG

    Gene models with high sequence identity

    1. AT4G25620.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 4e-58; Score: 223.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G25620.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Computational Description
    hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 940 Blast hits to 722 proteins in 169 species: Archae - 0; Bacteria - 80; Metazoa - 158; Fungi - 130; Plants - 239; Viruses - 59; Other Eukaryotes - 274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR