K15921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15921

Determination of introduced cDNA(s)

  • J033118J24 - Rice Full-length cDNAs - Original: J033118J24

    full reading [+] show sequence

    Nucleotide sequence: J033118J24 - full reading 
    TTTTTTGCCG ACTTCTCCTC CCCCAACCTC TCCGGCGACG CATCGAACCC 
    CAAAATTCTT CCTCTCTCGA GAGAGAGCTA GGTTAGGATC GGATCAATCT 
    CTCGCTTCCT TCCCGTGAAG ATGTCGTCGC CCGCGGGGGA GGATGAGAAG 
    AAGCCGGCGG GGGGAGAGGG CGGCGGCGCC CACATCAACC TCAAGGTCAA 
    GGGACAGGAT GGCAACGAGG TGTTCTTTCG TATCAAGAGA TCAACCCAAC 
    TGAAGAAGCT GATGAACGCC TACTGTGATC GCCAGTCCGT GGATATCAAA 
    TCTATTGCCT TCCTGTTTGA TGGTCGTAGG CTCAATGCTG AGCAGACCCC 
    TGACCAGCTC GAGATGGAAG ACGGCGACGA GATTGACGCC ATGCTTCACC 
    AGACTGGGGG CTCTCTGCCT GCCTAGAGCT CATATGAAGC TGTTGCAACA 
    ATGCAACCGC ATTACTATTT TCTGCCTTGT TAGAGTCAGT CAGTCTAGAG 
    GACATGAAAC TAGTCTAAAG AACTTGTGAA TCGTTTGGTC CTGTGCCCCA 
    GCTGAAGGAC ATTAGGGTGG CTTTGTTTAG CGAGACTTGG TACTTTGGTG 
    TGTTAATCCA TCGCCTAATT TATCCT

    Gene models with high sequence identity

    1. AT4G26840.1 [+] show detail - small ubiquitin-like modifier 1
      E-value: 2e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin 2.2e-13
    superfamily Ubiquitin-like 1.4e-23
    HMMPfam Rad60-SLD 1.5e-25
    Gene3D no description 1.2e-31
    ProfileScan Ubiquitin supergroup 15.231
    HMMPanther UBIQUITIN-LIKE PROTEIN SUMO/SMT3-RELATED 7.3e-48

    See the detailed result >

    AT4G26840.1

    Model type
    Protein coding
    Short Description
    small ubiquitin-like modifier 1
    Curator Summary
    Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
    Computational Description
    small ubiquitin-like modifier 1 (SUMO1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR