K15926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15926

Determination of introduced cDNA(s)

  • J013107E18 - Rice Full-length cDNAs - Original: J013107E18

    full reading [+] show sequence

    Nucleotide sequence: J013107E18 - full reading 
    GGAGTGGAAG CAAGCGGAAG AAGGGGAGGC AGATCTCCCT CGGCCAACCC 
    CAAGCAGATC CCGACGATGC TGCCCACGAC GGCGTCCAAA GGGCGCGGCG 
    CCGCCCGCTC TGCGCCGCCG CTCTTCGGCC CCTACCTCCG CCGCATCGTC 
    AAGTGGCAAC AAATGGATAT CGAGTACACA TTTTGGCAAA TGGTCCATCT 
    CTGTACTTCA CCAAAAGTAG TCTATCAGCA CACCAAATAT CACAAGCAAA 
    CAAAGAATCA GTGGGCTCGG GATGATCCTG CTTTTGTTGT CATTCTAATT 
    CTTTTCCTTG TGTTTGCAAC ATCAGCTTAC TGTGCAGCGT ATGGAGAGAG 
    TCCTTCACAT GCTGCTTTAA CAATCACTTC AGTTGTGCTT GTCCATTTCT 
    TGTTTGCTGG GATAGTTCTG GCCACACTTT GCTGGTTTCT TACAAATTCT 
    TACTTGAGGG AGGAACCTAA CAGTCATGTG GTTGAGCAAC GTGTGGAGTG 
    GCTCTATGCA TTTGATGTTC ATTGCAACTC ATTCTTCCCA GCCTTTGTCA 
    TCCTATATGT GCTTCAATAT TTTCTATCGC CTCTGTTGGT CGCACATGGC 
    TTCTTTCCTG CTCTATTATC AAACCTCTTG TTTGTGGTGG CAATTTCTTA 
    TTATCACTAC CTGAATTTTC TAGGATATGA TGTTCTTCCA TTTTTGGACA 
    GAACAACATT TTTCTTGTAC CCGATTGGGC TTGTCATCAT TCTCTCTCCA 
    CTGATGATAC TCATAGGGTT CAATCCAACA AGATACTTTT TGAGCTTGTA 
    CTTCCGTTAA GGTCGATAAC TAGAACAGTA AGAGAAGACT GGTGACAAAA 
    CTAATGGCAG ATTGGGTACA CACTTTTTAC TCTAGCTTCT TAAATCTTTG 
    TGTGAATTTG AGGAGAGTGA GGCTCAGGAA AAGGTCGATT TGTTCTTGAG 
    ATATATTACT GCCAGCGTGG GCCACGGGCA CAGGCCTTTT GGTTGGAGCC 
    CATTTTGGTG TCAACTTGTT CATAATATGT ATTGTTTCCA TTGATTAAAG 
    AGTCAAGGAC CAGTGTACAA TTTTAGTGGG AACCGGAACT TAAGCCGATT 
    GTATCGAAGG GGCACCAACA TTGTAATCCA CCTGCCTAAG AATCATGAGT 
    TTTTAGTGGC

    Gene models with high sequence identity

    1. AT2G15240.1 [+] show detail - UNC-50 family protein
      E-value: 2e-110; Score: 395.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UNC-50 1.4e-90
    HMMPanther SUBFAMILY NOT NAMED 2.7e-156
    HMMPanther UNC-50 2.7e-156

    See the detailed result >

    AT2G15240.1

    Model type
    Protein coding
    Short Description
    UNC-50 family protein
    Computational Description
    UNC-50 family protein; CONTAINS InterPro DOMAIN/s: UNC-50 (InterPro:IPR007881); Has 331 Blast hits to 331 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 93; Plants - 47; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR