K15933

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15933

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15933

Determination of introduced cDNA(s)

  • J023072L02 - Rice Full-length cDNAs - Original: J023072L02

    full reading [+] show sequence

    Nucleotide sequence: J023072L02 - full reading 
    GAGCCACTCG CCACTGCAAA GCGCTCTCTC TCTCTCTCTC TCTCGCATCG 
    CGCGCAGCCT TCCTCATCCC CGTCCTGATC CACTCCACCT CCCTAATCCA 
    CAGCGCGCGC CAGAGGAAAT CCGGCGCCGG TCGAGGCGGC CGCGCCGCGC 
    CGCCGTCACG CCCAGCCCAC TCGATTCGGT CGCGTGTGCG CTAGGAAGTT 
    CGTCATACGC CTCGCGGTTT TCACTTCGTG TGTTTTTCTT TTAAATTTTT 
    ACCTGTGCTT CGTTTAAAGC CTCTCTTGAT CTTAGGTATA GCTTTGCTCG 
    ATCTGATTAT AGGTATGTTG TATGTTTCTG GTCTCCCGTG ATTGCGCGTG 
    GATTGTGATT ATGACTAATT TGCTTGATCT GAATATCTGA TTGTGGTGGT 
    GGTGTGTGTG TGTGTGTGTC TGATTTGTCT GATCTGTTGT GGATTATTAT 
    TGTATGATTT ACCGTGGTTT TATGTTGTTT ATATATAAGC GTTTGCCATG 
    AGTCTGATTA ATTGTATTGT TGCGGTTTTT CCTAGGTGTC ATACTGTCAT 
    GCTCGATTTT TACAAGGTTT AGTGCAAACT GATAGATGAT GTCCATCCCC 
    AAAACTCCGT CTACCAGTAT TGGTTCATGT GCGAGCACAC GGGATAGTTC 
    GAGTTCCTGT TTGATATTGA TTCGCTGGCG CTGGTTGTTT GGTTGGTTTA 
    TTAGCTAGAG TTGTTTGTGT GCAAAGGTGG GATCATGGTT GCAAAGGCAT 
    ATTGATGAAT GACGATTCAT AAGCGTGGAA AGCAATCTCT GTGCAAGGGG 
    TTATTAGGAT TCTTTGTGCG TATTCACTCT AAACCGATAG TCTTGTATTG 
    CTATCAGCAC CACGTTATCT ATTTCCTAAC CAATGTTTTC TGCATATGGA 
    CTCTGCATTT TGCTTCCTCT CCTTGTACCA CACCCAGTAC CCTATGTTTG 
    TGCCTCTCCC ATGGTCCATC TCTCCTGTTA AAAAAATAAA AATAAAAATA 
    ATAGAATAGA AAAATTCTAG ACCAAATACA GGGAAGAAAA TAAATTTTGT 
    CAGGCAAGAG AGCGACGAGG CGATGGGGAA CTTATTACTT TTCTGGACAA 
    ATCCTTCAAT TTGCCTCATC TATATCAATG GAATTGGGAA AGCAGTGGAC 
    TACTTACCAT GTATTGGCTA CTAATTTCCA CCACTCCTTG CCAGAGAATT 
    GGGAAAGTGA ATTCTCTTAT GCAGGTTCTG TCAGAGTATT GTACCAGTCA 
    TTGAGATGAC TGTATTCAGT AGAGAAGTTT TGTAGATAGG TTAAATTTCA 
    GGTACAAACC AATGAAGTAA AAAAGTCTTA GTATGATGGA TGTGAGAGGC 
    TCAAGAAGTT CCCTGATTGG AGAAGCAAAG GAATAAGTTT TTTATATGGA 
    TGTGCTATGG ATTTTAATTA AAAGAATGGA GAAGTTTCTT TTGTTGAAGA 
    TGAAGCTGTT GGCAGCTGGA GAGAATGGGG GTGGACACCA CAGTAAGTTT 
    GATGCAGATG GACACTGTTC GAATTGCTTG GGAACTCTTC CATGGAATCT 
    GGATGGATAC CTTATTGGGT AGTAAATTTC TTAATACAGC TCGCTATCCA 
    GATAGCGCTA GCTGTGATTG TTTGGTGATC AATCTATTGG GATTGTGCCG 
    ACTGGAGCTG TTCGACATTG CTTTGGTCTT TTGTTGATTT GCCTGGAGTT 
    CGGCAGTATA CAGCAACCCT GGAGTGCATG CAGTGGTTTC CTCATTTTTT 
    AGGACCTGAC TGCATTCTGT AGTGAGAACT ATCCTGCTAA ATGCATAATA 
    CTTGCAGGTG TTTTCTGTTG TATTGGCAAC GTGATAGTTT TTGTGGTGCA 
    AAACATTCAA GATGGGCGCC ATGGACGTAC AACTTGAGTC TACTGCTGTT 
    CAACATGGAC AAGCTAAGAT AAATGTGGAG GAACATGCTC TAGTTTCTCT 
    GTTGTCTGAT GAGAAGTACG CAACTGAAAA GACCGAAGAT GTGGACCCTG 
    ATGATTATGA GAAACTTGAG GAAGGGATAA TGCAGTATGG GTGTGCACAT 
    TATCGAAGAA GGTGCCGCAT TCGAGCTCCA TGTTGCAACG AGATTTTTGA 
    TTGTCGGCAT TGCCACAATG AAACAAAGAA TTCAATTAAA ATTGATGCTG 
    TGAAGAGGCA TGAACTCCCA CGCCATGAAG TGCAGCAGGT TATATGCTCG 
    TTGTGTGGCA CGGAACAAGA GGTACGGCAA GTATGTATCA GTTGTGGTGT 
    ATGCATGGGG AAGTACTTCT GTGAAGTGTG CAAGCTCTTT GATGATGATG 
    TTTCAAAACA GCAATATCAT TGCAATGGTT GTGGAATATG CAGAATTGGT 
    GGCTGGAGAA AG

    Gene models with high sequence identity

    1. AT5G25560.2 [+] show detail - CHY-type/CTCHY-type/RING-type Zinc finger protein
      E-value: 3e-53; Score: 207.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, CHY-type 26.125
    ProfileScan Zinc finger, CTCHY-type 20.418
    HMMPanther RING FINGER AND CHY ZINC FINGER DOMAIN CONTAI 2.8e-43
    HMMPfam Zinc finger, CHY-type 4.2e-17

    See the detailed result >

    AT5G25560.2

    Model type
    Protein coding
    Short Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    Computational Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 943 Blast hits to 942 proteins in 169 species: Archae - 2; Bacteria - 0; Metazoa - 357; Fungi - 128; Plants - 310; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR