K15937

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15937

Determination of introduced cDNA(s)

J033049I18 - Rice Full-length cDNAs - Original: J033049I18

full reading [+] show sequence

GACGGTGCGG TTTCCCTTTC CCATATAAAT CCCCCCCGCG TCCGCTGCGA 
ACTACTAAAC CGAGAGAGAG AGGCGCACAC ACGAAGACGA GGCGGCGATG 
GTGAGCGGCG GAGGAGTAGC GGCGGAGAAC GGCGAGATGG TGGGGAACGG 
GGAGGGGAGG AAGGGTGCGG GGGCGAGCGT GCTGGTGACG GGGGGAGCGG 
GGTACATCGG GACGCACACG GTGCTGCGGC TGCTGGAGAA GGGGTTCGCG 
GTCACCGTCG TCGACAACTT CCACAACTCC GTCCCGGAGG CGCTCGACCG 
CGTCCGCCTC ATCGCCGGCG CCGCCCTCTC CGCCCGCCTC GACTTCATCG 
CCGGGGATCT CAAGAGCAAG GACGACATGG AGAAGGTGTT CGCCGCCAAG 
AGGTATGACG CCGTGATCCA CTTCGCCGGG CTGAAGGCGG TGGGGGAGAG 
CGTCGCGCAC CCGCAGATGT ACTACGAGAA CAACGTCGCC GGCACCATGA 
ACCTCTACTC CGCCATGACC AAGTACGGCT GCAAGAAGAT AGTGTTCTCG 
TCGTCGGCGA CGGTGTACGG CCAGCCGGAG AAGACCCCCT GCGTCGAGGA 
TTCCAAGCTG AGCGCTCTCA ACCCATACGG CACCACCAAG CTCGTCCTGG 
AGAACTACTT CCGGCAGGTG CAGGCCGCCG ACCCGGAGAT GAGGGTGATC 
CTGCTCAGGT ACTTCAACCC CATCGGCGCT CACCGGAGCG GCGACATCGG 
GGAGGACCCC AGGGGCATCC CCAACAACCT TCTTCCGTAC ATCCAGCAGG 
TCGCCGTCGG CCGCCGCCCC GAGCTCAACG TCTACGGCGT CGACTACCCA 
ACCAGGGACG GCACCGCGAT CAGGGATTAC ATACATGTAG TGGACCTTGC 
CGATGGCCAC ATTGCCGCAC TGGAGAAGCT CTTCGCTACT CCTGACATTG 
GTTGTGTGGC TTACAATCTA GGAACAGGGT GTGGAACAAC GGTGCTCGAG 
GTGGTGAAGG CGTTCGAGGA GGCGTCCGGA AAGAAAATTC CTATCAAGAT 
TTGCCCCAGA AGACCTGGAG ATTGCACTGA GGTTTACGCT TCCACTGACA 
AGGCCAAGAA GGAGCTCGGA TGGAGTGCTC GGTTTGGAAT AGAGGACATG 
TGCAGGGACC AGTGGAATTG GGCCAAGAAG AATCCGTACG GATACAGCGC 
CAATGCTGAG CAGAATTAGG GCGATCATAT TACCACTTAT ATAGTACTAG 
TATCAAAATT GTCCATGGTC TTATGAACTG TGTGACTAGA AAATGTTAAT 
AAGACATGCG TGCCTCTTAA GTGGAGTATA CCAATTCTTA TTTAGTCGAA 
TCCGTTGTGA TTTTAGATAC TGGCAAATGT TAATCAGGTT TATTTAAATA 
CTATACTAGT AGCAAGATCA AATTG

Gene models with high sequence identity

AT1G12780.1 [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 1
E-value: 2e-147; Score: 519.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	UDP-glucose 4-epimerase	3.5e-160
HMMPanther	UDP-glucose 4-epimerase	3e-179
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	3e-179
superfamily	NAD(P)-binding domain	8.8e-103
Gene3D	NAD(P)-binding domain	9.2e-62
HMMPfam	NAD-dependent epimerase/dehydratase	1.6e-53

See the detailed result >

AT1G12780.1

Model type: Protein coding
Short Description: UDP-D-glucose/UDP-D-galactose 4-epimerase 1
Curator Summary: Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.
Computational Description: UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress, galactose biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1); Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799; Bacteria - 25009; Metazoa - 650; Fungi - 500; Plants - 1081; Viruses - 38; Other Eukaryotes - 14353 (source: NCBI BLink).
Link: InterPro Scan - TAIR