K15944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15944

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15944

Determination of introduced cDNA(s)

  • J033094G05 - Rice Full-length cDNAs - Original: J033094G05

    full reading [+] show sequence

    Nucleotide sequence: J033094G05 - full reading 
    CTCTCTCTTT CCCCACCGCC TCCTCCGCCC CAACGCGGTC TCCCTCCCCC 
    CCCCCTCCCC CGCGCGATCG CTCGCACGCA CGGCCGCCGC CGCCGCCGCG 
    CCCAGCCATG GCGGACGTCG CCGCGGACCG GCCTCCCGCG GCCGAGCAGG 
    AGGAGGCGCG GCCGCCCTCA TCCACCGCGG CGGTGGCGGA GGAGGACGAG 
    GAGGAGGAGG AAGGGGACGT GTGCCGGATC TGCCGGAACC CGGGGGACGA 
    CGAGCACCCG CTCCGGTACC CGTGCGCCTG CAGCGGCAGC ATCAAGTTCG 
    TGCACCAGGA CTGCCTCCTC CAGTGGCTCG ACCACAGCAA CTCCCGCCAG 
    TGCGAGGTAC GGAACCCTCG GTTCGCTTTT ATGGGCCGCG GGGGCCTTGG 
    GGTTTGTCTC GATTCGGCGG TGGAATCGAT CGATTGGATG ATAATCCGGT 
    GCATTTGCTC GATAATTTCT GGTGAATTTT TGCGGTGTTG TATGTAGCTG 
    GTGGTTGTAA TAGGTCAGCA TCACTTCGCT CGCGCTGGAT AGGGGCAAGT 
    GATAACAGTG ATACCTTTTA TGGGCGAGAG AGGTTTCTAC GGCTCTAAGA 
    TGATATAATT TGTGCAATAG GGTTTGTGAA CCGTACGCTG AGACATTGTT 
    TTTATTTAGA TTATTTTACA AGGCTGCTAG CTGTATTTAT TTGATCTCGT 
    GGCAACATTA GCTAGTTTCA GATATTTCTC TACAATCACA TTTACAGATG 
    TAAAGCTTAG TATGGACAAG GTTTTCTACC TGTGACTGCA AGAGATTGAA 
    AACTAGCACA TTATTT

    Gene models with high sequence identity

    1. AT4G34100.2 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-23; Score: 105.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-CH-type 21.221
    Gene3D no description 0.0000000000000041
    HMMSmart Zinc finger, RING-CH-type 6.7e-20
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 2.8e-20
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 2.8e-20
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000001

    See the detailed result >

    AT4G34100.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR