K16011

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16011

Determination of introduced cDNA(s)

J023019K20 - Rice Full-length cDNAs - Original: J023019K20

full reading [+] show sequence

GGTGCCGCGT GCGTGACTGC CAGCAGCAGC AGCAAGCGGA GGAGAGGAGA 
GACGCGCCGC CGCCGCCGCC GCCTGCGAAG CAAAGCGGCG AGCGAGAAGC 
CAACGGCGCA TCAAAGTGAG GATATGGAGA GGGGCGCCGC CGCCGCAGGA 
GCGCTCTCAT GCACCTTCCG CTCCCCTTCC CCTTCCCCGA CGTCCCCGGC 
CGCGCCCCAT TGGCGGCCTC TCCTCGGCTT CCGCTCCCGC TCCCGCTCGC 
GTGGCCGGGG CTGGGGCCAG CGCGCGGTGG TCGCCGGGGC ACCGCGGTTA 
TTCCTGCCGC CACCATGCCG GCGCTTCAGA TACTGCAGTC AAAGCAAGCT 
TCTAGGCACG AACAAAGGGC AAAACAGATG CTCGTTGGCA ACTTTCAGCT 
CATTTGGACA GTCAGGGATC AGTCTGAACA ATGAAGATTT AGTGAAAGAT 
AAGCTCCTAA TAGATTGTGG GGAAGATCAA GATTGTGTGA TTGATGGGAT 
AGTTGCCTTG GGAAAGTTTG ATGCCCTTCA CATTGGCCAT CGAGAATTGG 
CAATGTATGC TTCTAAGGCA GGAACTCCCT TTCTTCTTTC TTTTGTGGGA 
ATTGCTGAGG TTCTTGGCTG GGAGTATAGG CCTCCTATAG TTGCTCAGTG 
TGATCGGAAG CGAGTGCTCA CCTCTTGGGC TCCATACTGT AAGAATGTAG 
TGCCTATTGA ATATCAAGTT GAGTTTTCAA AGGTCAGGTA CCTAACTCCG 
CGGCAATTCG TTGAGAGGTT ATCAAGGGAT CTTAAAATAC AAGGTGCTGT 
AGCAGGTGAA AACTACAGAT TTGGCTACAG GGCATCTGGC GATGCAGCTG 
AGCTAGTGAA ACTATGTGAA GAATTTGGTT TAAGTGCATT TATTGTACGG 
TCAGTCATGG ACACAGCTAG ATCTTATAAT GGAGTTACAA CCTCCGTAAA 
TTCAAGCGAC AAGGGGCAGG TTTCTTCTAG TCGTGTTCGC CATGCTTTGG 
CTATGGGTGA TATGGAATAT GTTTCTGAAT TACTAGGGAG GAAACACCGC 
CTTGTGCTGA CAGTTAAGGA AAACCACCTT CAGGAAAGGA AAAGGATCAT 
GCTGCCAAAA TCTTGCATGT TGAACATGCC ACCAGCTGAT GGTTTGTATG 
AGAATTGTGA CCTTCTTAAT GGAGGCCATC TTGGACTATG CAGGGTGATC 
ATAAACTCAG AGACCATTGT AATTGAGATG AAAGATGAGA ACAGTTTATT 
ACCAAATACT ATTCAAGAAA ATCAGCAATT AGGTATTGAA TTTGGATGAT 
ATGGTACAGC TCAATTCATG ATTGGTGACA TGGCAGGTCA TATTTTGTAC 
TATATCTTCA TTATATCTGG CACCTTGCGG ATTAGTTTGT GTTGATGCTA 
AATAGTGCTG ATTTTATCTG GAGGGGATAT AGAGCAAGAA AGAAAAAAAC 
TGAGAACTTT GTATTCAAGG GTGTATACCT CATCGTGATC AAGCCAAAGA 
GCATCTTATA GATGAACAGA GATTTTGTGC AAATTTGCAT TTCATGCAAC 
GAGAAGACAT GGTAGTCAGA GAGGACATTG TCCTTTTTCT CCCTGGGAAT 
TGGCAACGAT AGAACTGACT AGCTTCTAGC TAGCTGTATC AGCAAAGCTG 
AAGCACAAGG AAACATACAA GGGAACTCAT TTCCCAAATC CCACCTAGTA 
CGTTTTTCCA GCTTATGAAA TTGTGATTTG TACAAATAGG TTTCATTTAC 
ACAGCAACTT CCCATTGTTA GATAGCAGCT TGTTCCATCA ACAGTTAATG 
AAATATGTTG CTTGATCTTC G

Gene models with high sequence identity

AT5G23330.1 [+] show detail - Nucleotidylyl transferase superfamily protein
E-value: 6e-86; Score: 315.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERA	1e-33
Gene3D	Rossmann-like alpha/beta/alpha sandwich fold	4.7e-22
superfamily	Nucleotidylyl transferase	5.2e-25
HMMPfam	FAD synthetase	1.6e-12

See the detailed result >

AT5G23330.1

Model type: Protein coding
Short Description: Nucleotidylyl transferase superfamily protein
Computational Description: Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), FAD synthetase (InterPro:IPR015864); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT5G08340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR