K16015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16015

Determination of introduced cDNA(s)

J033071K05 - Rice Full-length cDNAs - Original: J033071K05

full reading [+] show sequence

GCTCCTGTCC TGTCTCCCCT CTCCACTCCA CCGCCGCCGC CGCCTCCGCG 
AAATGGCGAA TCTGCCGCCG TCGCTCTCCA TCGGCGCCGC CTCCTTCGCC 
GCGCCCTCGC CCCCGCCGCC CTCGCCTGGC GCCTCCTCGT CGTCGTCGGC 
GGCGGCGGCG GCGGCTCCGG GGGCCGCCAA GGACCGGAAG ATGGCGTCCG 
CGGAGCAGCT CGTGCTCGAC CTCTGCGACC CCGAGCTGCG GGAGAACGCC 
CTCCTCGACC TCTCCAAGAA GCGAGAGATT TTTCAGGATC TTGCTCCACT 
CCTGTGGCAC TCTTATGGAA CAATTGCTGC ACTACTCCAG GAGATTGTGT 
CAATCTATCC ATCACTTTCA CCCCCAACAT TATCTCCAGG GGCTTCAAAC 
CGTGTCTGCA ATGCACTTGC ACTTCTTCAG TGTGTTGCCT CACACAGTGA 
CACAAGGATT CCTTTCTTGA ATGCTCACAT CCCACTGTAT CTGTACCCTT 
TCTTGAATAC TACTAGCAAG ACAAGGCCTT TTGAGTACTT GAGGCTTACC 
AGCTTGGGTG TCATTGGCGC ACTTGTGAAG GTTGATGATT CTGAAGTCAT 
TGGGTTTCTG CTGCAAACTG AAATAATTCC TCTGTGTCTC CGTACTATGG 
AGATGGGCAG TGAACTTTCG AAAACGGTTG CCACCTTTAT TGTTCAAAAG 
ATTCTGCTTG ATGATGTTGG GCTTCGCTAC ATATGTGCTA CTGCTGAACG 
TTTCTTTGCC GTAGCCAGTG TTCTATCACA GATGTTCAGG CACTTGCTGA 
TCAACCTTCT CCAAGACTGC TGAAGCACAT AATTCGCTGC TACCTCAGGC 
TGTCAGAAAA TTCCAGGGCA TGTACCGCGC TGAACAGCTG CCTCCCCAAC 
GCGCTGAAAG ATGGAACCCT CAACAACTTC CTCCAGGATG ATCATGGCAA 
TGTTCTGGTC CTCCAGTGAC GACTTTGTGG AGAATGAATT CTCAGTCAGG 
GAGGGTGATG CAATCTCCAT GAGTCATGTA CAAGAGACTC TCCAAAGGTT 
GGCTCCAGAT CTTTACCAGA ATGTGTTTGG CGCCCTCAAT GAGGTACACT 
ATACAGAGGA TGGAAGGCCA CCGAAGAGTG TAGTTGTTTC GCTCAAGAGG 
CTAATTACAG AGATCACATC CGAGATGACA CCTACTGAGT TCGTAGCATT 
CTCACTGGAG ACGAGTCGCA GGGACTTGAT TCACCAGCTA AGTGATGTGT 
CCCACCAGGA ATTTCGCTTG AAGGTCTTGA GGTCTCTTCA GTCTGTGGCA 
TCTGCTTTAA TCCACCTCCA CATGCTGGAT AAAGAGATGT TGGAGCCCCA 
CCTCTCACGG CCAACACTCT TGGGGTGCAA AGATTATTCA CCGCTAAACC 
AGGATCCATA TTGGCCCCAT TTTCAAGTTT TATCAGATGA GGAATTAAGT 
GTTGAAGTCC GTCGAGGCTC CCTGCCAATG TTCTGAGGTT TGATTTTTGT 
GCAAAAGGAG GTGAAGAACT AGAGGAAAGT GAAGAGGAGA GAAAAGTCGG 
TGTTGTTTGA AAGCTTCATG CCATATTGCG CCCCTTCCTT CTAAGGCGGA 
TGAAGGTGGA TGTAGAGCAA ATGCTTCCAT GAAAGAAAGA GATAATCATT 
TATGCTAACA TGACTGACAA TCAGAAACAA ATCCAAAATC ACTTGGTTGA 
ACAAACATTT GATGAATACC TGCATGAAAA ATCAGAAATT GGTACGG

Gene models with high sequence identity

AT3G20800.1 [+] show detail - Cell differentiation, Rcd1-like protein
E-value: 8e-112; Score: 83.60

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Cell differentiation, Rcd1-like	4.8e-18
HMMPfam	Cell differentiation, Rcd1-like	1.4e-102
HMMPanther	Cell differentiation, Rcd1-like	3.9e-116
HMMPanther	Cell differentiation, Rcd1-like	8e-18

See the detailed result >

AT3G20800.1

Model type: Protein coding
Short Description: Cell differentiation, Rcd1-like protein
Computational Description: Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT5G12980.1); Has 491 Blast hits to 488 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 135; Plants - 110; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Link: InterPro Scan - TAIR